K21822

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21822

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21822

Determination of introduced cDNA(s)

  • J023114H02 - Rice Full-length cDNAs - Original: J023114H02

    full reading [+] show sequence

    Nucleotide sequence: J023114H02 - full reading 
    TTTGGCATCT ACATATCTGT TCAGTACTTC TTCCAGGCAG TTGTTCTGTA 
    TCCTCTTCTT GTTGCAACAA TTGTCTTGGC TGCTGTCTTT ATAGTATTCA 
    CTCATCTGCC ATCTGAATCC AGCACAAGGG TTTTGCCATG GGTGTTCTCT 
    TTCTTGGTAG TTCTATTTCC AATCACATAT CTTCTTGAAG GGCATCTAAG 
    AGCTAAAAAT TTTGTGGATG ATGAGGAAGC AGAGAACTTC ACCAACATGT 
    TGGCTATAGA AGGGGCCAGA ATGTCACTTT TGGGTCTATA TGCTGCCATT 
    TTCATGATTA TTGCATTAGA AATTAAGTTT GAACTGGCTT TGCTATTGCG 
    TGAGAAAGCT GCAGACAAAG GTGTAACACA TGGTCCACCT GGTCGGAGTT 
    CTGCCTTTCC ACCAAAGGCA AGGCTACTTC AGCAGCGAAG AGCTCATGCT 
    GCGCCAACTT TCACTATCAA GAGATTGGCA GCAGAAGCAG CTTGGATGCC 
    TGCAATTGGC AACTTTTCAA CTGTGCTGTG CTTCATCATC TGCCTTATTT 
    CTCAACGTTA CTCTTACCGG TGGCTCAAAT CGTGCTATTT TCTTCCTGGC 
    ACCTATCCTT CTGCTCTTGA ACCAGGATTC AGATATCATT GCAGGATTTG 
    GTGACAGGCA ACGTTACTTC CCTGTAACAA TCTCCATTTC TGTTTATTTA 
    GTATTGACAG CATTGTATCG TTTATGGGAG GAGACTTGGC CTGGCAGTGG 
    CGGGTGGGCA CTTGATATTG GGGGCCCAGG CTGGTTCTTT GCTGTGAAAA 
    ATGTTGCCCT TCTCATGATG ACATTACCTA ATCACATACT CTTCAATCGC 
    TTCATGTGGG ATTATGTCAG GCAGACAGAT GCGAAGCTAC TTCTGACGCT 
    GCCCCTCAAC TTGCCGTCAA TTATAATGAC AGACATACTT ACTGTGCGGG 
    TACTAGGACT GTTAGGTGCT ATTTATTCTC TATCACAGTA TGTTATATCA 
    AGGCGGATAA GACTTGCTGG GATGAAATAC ATTTAAACTA GGACATGCAA 
    CTTCTTTTGA GGTAAATCTT GTATGCCCTG CGTCAATGGT TGTGAATAAG 
    AGTCTCCAGC TTCTGATGCT AATATTTCGG TGCTTGCTTG CAGGCTTTCA 
    ACCATATACG ACGGCGATTG CTTTCAAAGG CTCTTGCTTG AAGTCACATT 
    TGTCTGGTGA ACTGTGAACA AAATTGCGCC TTGAAGTAGA GAAACAATGG 
    TCAGTAGTCA CCAGTTTTGC CCTTAGATGA TCTTTATACT GGTAACCTAA 
    GGTGTTGTAG TATAAATGTT ACTGAACTCA GCTCGTACAG CACATCACCT 
    TGGGTCCTCA GAACCTGTGA CCATACAGCA TTTTGTGTCA GATACTTTCT 
    TATATAAGCC TCACCAGAAC TGACATATGC TGAGTCTGCA TAGATTCTTT 
    TGTTGTCCAA GTGACTAATT CTGAATGGCA ATGTTCTCCA CGGAGCTGTC 
    TGGTTCTGTT TGCTTCCTAT ATTAATACCT TTTCAATGTA CATTATATAT 
    GATAGGGTAT ATGCTGAGGT CTTGGAGAGT TGGAGTGACT GATCTTCTGT 
    TTGTCAGTAA TCAGTCAGTT TTTTCCCAAA AAAACTTTTG ATTTCATGAG 
    ATAGTTTTAG GATCTGCTTT CTGACTTGTG AGGCTGTTCT TTGGTACTAC 
    ATGAAGATTT GCTTCGTATT CGGAAGTGCA CGAGTTTCTT CAGGTCGCAG 
    TGATAGACAC GGGATATTCT AAACTACCAT GTTTGATGTT TCATCAGAAC 
    ATTGTCTATG CAATTTTCCG CTTCAATGCA TTTACTTATC TCG

    Gene models with high sequence identity

    1. AT5G13390.1 [+] show detail - no exine formation 1
      E-value: 9e-95; Score: 178.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G13390.1

    Model type
    Protein coding
    Short Description
    no exine formation 1
    Curator Summary
    Required for normal pollen development and lipid accumulation within the tapetum
    Computational Description
    NO EXINE FORMATION 1 (NEF1); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR