K21829

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21829

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21829

Determination of introduced cDNA(s)

  • J023007G07 - Rice Full-length cDNAs - Original: J023007G07

    full reading [+] show sequence

    Nucleotide sequence: J023007G07 - full reading
    GATCCATTCC CCGCAAGTCT CCCTCTCGCA CCACAACAAA CGCGCCTCCT 
    CCATCTCGAA CTCTCCAGTC TCCACCACCC CCGTCCCCGT CTCTCGATCG
    CCATGGCCTC CGCCCTCGCC GCCTCCACCG CCGTCTGCTC CTCTCCCCTC
    GCATCCGCCT CCGCCTCCGC TTCGTCCGCG CGCCGCCTGC GCGCGGTCCC
    GCCCTCCCGC GGCATCCGCT ACCAGGCCCT CCGCGCGGAC TCCGGTTTCG
    CCGGGAACCG CCGGGGTGGC GGCCGTGGAG CGTCGGTAGT GTGCGCGGTC
    CAGGGCCAGG ACACATCCAT CCAAGTTCCA GAAGTGACGA AGTCAACATG
    GCAATCACTT GTTATGGAGA GCGAGCTTCC TGTCCTTGTT GGATACTGGG
    CTACATGGTG TGGGCCTTGC AAAATGATTG ATCCCGTTGT TGGCAAGCTC
    TCCAAGGAGT ATGAAGGGAA ACTGAAATGC TACAAGCTCA ATACTGACGA
    GAATCCAGAT ATAGCAAGTC AGTATGGCGT CCGGAGCATC CCAACCATGA
    TGATATTCAA GAACGGAGAG AAGAAAGATG CAGTGATTGG AGCTGTGCCT
    GAGAGTACAC TGATCGCATC CATTGAGAAA TTTGTCGAGA GGTAAAATGC
    AAATGCCAAA ACTGAACCCT TTGAACAGTT AGCATTACAC GTCCAACTTT
    CAGAACTTCA GATCATTCAA GAGTCGAAGC CATGCTCAAT GTTTATATGC
    CTACGTGTAT AGATAGTATT GGGAATCGCT TTCGGTAGCA TCCAATAAAT
    GTAATTCGAG GATGCAGGTT GAATGATGAA ATCATGAAAG TCGCAAGGAA
    GCCTGGTTTC ATGTGTCCAT TCTTTTGGCT GTAGATATGT ATGGTATTGA
    CTGTTAAGAT ACATATTACC CTTTTACACT ATATTATTGC TTATGATATG
    TTCCTTCC

    Gene models with high sequence identity

    1. AT1G03680.1 [+] show detail - thioredoxin M-type 1
      E-value: 2e-36; Score: 150.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 12.813
    PatternScan Thioredoxin, conserved site 0
    superfamily Thioredoxin-like fold 4.1e-35
    FPrintScan Thioredoxin-like subdomain 7.1e-08
    FPrintScan Thioredoxin-like subdomain 7.1e-08
    FPrintScan Thioredoxin-like subdomain 7.1e-08
    HMMPanther THIOREDOXIN M(MITOCHONDRIAL)-TYPE 3.7e-41
    HMMPanther Thioredoxin, core 3.7e-41
    Gene3D Thioredoxin fold 2e-32
    HMMTigr Thioredoxin 1e-51
    HMMPfam Thioredoxin domain 3.7e-31

    See the detailed result >

    AT1G03680.1

    Model type
    Protein coding
    Short Description
    thioredoxin M-type 1
    Curator Summary
    encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.
    Computational Description
    thioredoxin M-type 1 (THM1); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, response to cold, positive regulation of catalytic activity; LOCATED IN: thylakoid, apoplast, stromule, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G03520.1); Has 21675 Blast hits to 20380 proteins in 3008 species: Archae - 297; Bacteria - 11532; Metazoa - 2886; Fungi - 1120; Plants - 1860; Viruses - 8; Other Eukaryotes - 3972 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR