K21830

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21830

Determination of introduced cDNA(s)

J033149D13 - Rice Full-length cDNAs - Original: J033149D13

full reading [+] show sequence

GAGCTAGAGC TAAGCTAATT AAGCAAGCTA ATGGGTTGGT AATAACAATG 
GCGGCGGCCG GACGAACACT TGGATGCATA TATGCAGGGA CGCTGGTGAC 
GGCGAGCGCG CACATAATAA CGGCGGTGAT CGGCTCCGGC GTGCTGTCGC 
TGGCGTGGGC GATAGCGCAG CTGGGGTGGG TGATCGGGCC GGCCGTGCTG 
GTGGCGTTCT CGGTCATAAC CTGGTTCTGC TCCAGCCTCC TCGCCGACTG 
CTACCGATCT CCCGACCCCG TCCATGGCAA GCGCAACTAC ACCTACGGCC 
AAGCCGTCAG GGCCAACCTA GGTGTGGCCA AGTACAGGCT CTGCTCGGTG 
GCACAGTACG TCAATCTCGT CGGCGTCACC ATTGGCTACA CCATCACTAC 
GGCCATCAGC ATGGGTGCGA TCAAACGGTC CAACTGGTTC CATCGCAACG 
GCCACGACGC AGCCTGCTTG GCATCTGACA CGACCAACAT GATCATATTT 
GCTGGCATCC AAATCCTCCT CTCGCAGCTG CCGAATTTTC ACAAAATTTG 
GTGGCTCTCC ATTGTCGCTG CTGTCATGTC ACTGGCCTAC TCAACCATTG 
GCCTTGGCCT CTCCATTGCA AAAATTGCAG GTGGGGCCCA CCCCGAGGCA 
ACCCTCACAG GGGTGACTGT TGGAGTGGAT GTGTCTGCAA GTGAGAAAAT 
CTGGAGAACT TTTCAGTCAC TTGGTGACAT TGCCTTTGCA TACTCCTACT 
CCAATGTCCT CATAGAAATT CAGGACACGA TGCGGTCGAG CCCGGCGGAG 
AACGAGGTGA TGAAGAAGGC GTCGTTCATC GGAGTCTCGA CGACGACGAC 
GTTCTACATG CTGTGCGGCG TGCTCGGCTA CGCGGCGTTC GGCAACCGCG 
CGCCGGGGAA CTTCCTCACC GGCTTCGGCT TCTACGAGCC CTTCTGGCTC 
GTCGACGTCG GCAACGTCTG CATCGTCGTC CACCTCGTCG GCGCCTACCA 
GGTCTTCTGC CAGCCCATCT ACCAGTTCGC CGAGGCCTGG GCGCGCTCGC 
GGTGGCCGGA CAGCGCCTTC GTCAACGGCG AGCGCGTGCT CCGGCTGCCG 
CTCGGCGCCG GCGACTTCCC CGTCAGCGCG CTCCGCCTCG TCTGGCGCAC 
GGCCTACGTC GTGCTCACCG CCGTCGCCGC CATGGCGTTC CCCTTCTTCA 
ACGACTTCCT CGGCCTCATC GGCGCCGTCT CCTTCTGGCC GCTCACCGTC 
TACTTCCCCG TCCAGATGTA CATGTCTCAG GCCAAGGTCC GGCGATTCTC 
GCCGACGTGG ACGTGGATGA ACGTGCTCAG CCTCGCCTGC CTCGTCGTCT 
CCCTCCTCGC CGCCGCCGGC TCCATCCAGG GCCTCATCAA ATCCGTCGCA 
CATTACAAGC CATTCAGCGT CTCCTCATGA TCAAATTAAT AATTATTTGT 
TAATACTGAT GATGATGATG ATATGATCCA TCGATCGATG AAGAACAAAT 
ATATATATAT AGCGAGATCG ATCGATCGAT CAAGATCGTG AATGATATAT 
ATAATACATA GTTAATCAAT CAGATGTTAA TTAAGTCGTG TTCGTGCGTG 
TCTTTCAGAG TTCAGATCGA CAGGTTGATT TGAGATGAGT GCTCAAGTGT 
TTCGTCAGAT GTAATTAACT ATGTAAGTGG TAAATTTAGC CTGATGATGA 
TGATGATCAG TCTGAATGGA TGTCATGTAA GTGGTAAATT TGACATGAAT 
GTAACAAAGT AGTAGCTTAG TTGC

Gene models with high sequence identity

AT5G49630.1 [+] show detail - amino acid permease 6
E-value: 3e-177; Score: 618.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	AMINO ACID TRANSPORTER	4.8e-95
HMMPfam	Amino acid transporter, transmembrane	5.2e-110

See the detailed result >

AT5G49630.1

Model type: Protein coding
Short Description: amino acid permease 6
Curator Summary: Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.
Computational Description: amino acid permease 6 (AAP6); FUNCTIONS IN: acidic amino acid transmembrane transporter activity, neutral amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: response to water deprivation, response to salt stress, aspartate transport, tryptophan transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 1 (TAIR:AT1G58360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR