K21847

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21847

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21847

Determination of introduced cDNA(s)

  • J023125H08 - Rice Full-length cDNAs - Original: J023125H08

    full reading [+] show sequence

    Nucleotide sequence: J023125H08 - full reading 
    GCAGAGGCAC CTCTAATTGA GCAAGCTTTT CAAAAACGCC TTGAAGTAGA 
    GAAAATCCTT CATGAGCAAG AGCAGCTGAG AGAGATTGAG CTCAGCAAGC 
    AACACCATGC AGGTGACCTG CAGGAGAAGA ACAGACTTTC TCGAATGTTG 
    GAGCATAAGA ACATTTTCCA GGAAAGAATT GTCCAACGTC GTGAAGCTGA 
    GTTTAGTCGT CTTAAGAAAG AGAGGGATGA AAGGACTAGT CAATTGATAT 
    CATCAAGGAA GCGTGAAAGG GATACAGTGC GGAAGTTAAT GTACTATCTT 
    AACTTAGAAG AGCAGCGCCT CCAAAGGCTC CGTGAGGAAG AGGAAGCTAG 
    AAAACGTGAA GAGGAAGAGA GGAGAAAGAG GGAAGAGACT GAGAGGAAGG 
    CTAAGCTGGA TGCAATTGCA GCCAAGCAGC TGCAGAGAGA GAGGGAACTA 
    GAAGAGAAGA AGGAAAAACA GAGAATGGAA GCTCTCATGG GAAGAGGAGC 
    TGGAGCTGCT GAGCCTGCAC GCACTCCTGA TGCTGCTCCG GTTGCACAGC 
    CAGCTCAGCC GGTAGCTGCA CCGGCTGCTG CTGCTGCCGC TGCTGCACCA 
    GCTGCTGGTA AGTATGTCCC GAAGTTTAAA CGAGGTGGTG ATGGTGGCAG 
    TAGTGCTGGC GGCCAGAGAC CTGCTGTGGC ACCTGAGCAA GACCGTTGGG 
    GTTCACGGGA TGATCGCCCA CGTCCTGATA TGCGTCCGCT CCGCCAAGAG 
    GCACCCCCTG CTCGCGATGC TGCTCCCCCA GCCCGCCAAG ATGGTCCTCC 
    AGGCACATGG CGACCTTCAA GATACTCAAG TTCATCATCT TCCTCAACCT 
    GGAGCAGCAG GCGCAACTGA AGCCGTCTGC TTTCAGATGT GGACTGCTAG 
    GGTGAGATTT TTTGCTGTCC AGGGCCATTG CTGAGATAAG CCTGTGAAAC 
    ATGGTTGAAT GTTTGACTGT TTGCGCATCA AATGCTCGTA AAATTTTGGA 
    GTTAGGACCT GCTTCAGGGC AATAGCACCT TTCCTAAGTT ATGTCAAATG 
    TTATTTCGTT GTTGCAGTTA CTCCATTGCA CACTGGATTG CTACTCGTTA 
    AGTTTGTCCA AACTTTGGCG CTGTTAGTAA TACTGG

    Gene models with high sequence identity

    1. AT4G11420.1 [+] show detail - eukaryotic translation initiation factor 3A
      E-value: 8e-27; Score: 118.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G11420.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor 3A
    Curator Summary
    Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits.
    Computational Description
    eukaryotic translation initiation factor 3A (EIF3A); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23330.1); Has 151795 Blast hits to 76455 proteins in 3156 species: Archae - 1231; Bacteria - 22686; Metazoa - 70860; Fungi - 11049; Plants - 6472; Viruses - 438; Other Eukaryotes - 39059 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR