K21907

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21907

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21907

Determination of introduced cDNA(s)

  • J013108L20 - Rice Full-length cDNAs - Original: J013108L20

    full reading [+] show sequence

    Nucleotide sequence: J013108L20 - full reading 
    GTCCTGTTTT CCCGAGCTGA GAAGAGGACA GAGCAAGCCG CATCCATGGC 
    GTCAGCGGCG ACCCTTCCGA AGCTTCGGTT CAGGCCAAAA TGCCACGGCC 
    ACTTCCAGGC AATCTATCCG GTTCATGTCC ATATCAAGAA CTGCAATGCT 
    TGCAAGTGTC AGATTCCTAC CCACGGGTTG CTTGTTTCCA GCGCGAGAAG 
    TCGTCCTGTC CTGCCAGTGT CGGCAGTTGG ATCAGGCGGG GGCTCATCGG 
    TTGCTGAGGA CGAGAGGAGG AGTGGCTTGT CGCTGCAGAA CGCCAAGACA 
    TCCGTTGTGT CACGCGACGA TGAAACGATC AATGTAAGAG TGGATTTGCC 
    TGGAAAGGCG ACACAGAAGG TGTTTGATGA AGCCTTGACA AGCTTGGCTC 
    GTGATGCACC GCCAGTTCCA GGTTTTAGGA AGTCCAAAGG AGGGAGAACA 
    TCAAATATAC CAAGCAGCAT TCTGCTGCAG ATGCTTGGCA AAAGCCGGGT 
    CACCAAGTTC GTTCTTCAGG AAATACTCAG CATCACTGTT GGTGATTTTG 
    TAAAGAAGGA AAACCTGAAG GTGAACCCTG AAATCAAGAC AACCCAGTCA 
    GAAGAAGAGC TCGAGTCATC GTTTACGCCG GGTTCATCAT TCAGTTTCAG 
    TGTTGTTCTG CAGCTTGAGA AGCCTGAATC TGATGAGACC TCAGAGAACT 
    CTGAATCTGA CGAGGCTTCT GAGCCCTCTT CTTGATAGTA GTAGTTCAGA 
    GAAGTGCTTC ACATTTGTAT CACTCCTTGC TATTCTCGCT AGAGAATGTT 
    CTTCAGAAGA GCAAGCAAAC AATTTCAGAT GAGACATTGC AGTTGATATG 
    CAGGTTGCAA GTGACACATC C

    Gene models with high sequence identity

    1. AT2G30695.2 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATE...
      E-value: 3e-19; Score: 92.40

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Trigger factor, ribosome-binding, bacterial 1.1e-07
    HMMPfam Trigger factor, ribosome-binding, bacterial 1.7e-09

    See the detailed result >

    AT2G30695.2

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR