K21908

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21908

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21908

Determination of introduced cDNA(s)

J023022P15 - Rice Full-length cDNAs - Original: J023022P15

full reading [+] show sequence

GGCTTTCCTT CTCCCCTCCC ACCAACTAAT CGATCTCCTC TCTCTCTCTC 
TCTCTCCCTC TCTATCCCAT TCGCGAGGCG GCGTCTCCTC CTCCTCCCGT 
CTCTCTCGCT TCCCCCCCAA ATCCGGCGGC GAATCCAGGG CCCCGCGCCG 
CGCCGACGAC CACCGCCGAT CGCGACCAGG AGGGAGGATG CTGGGCGCCG 
CGAGGAGGCA GCTCGGATCC GGCCCCATGC TGGGGCAGGT GCTGCGGAGG 
CTCCGGCCGG CGACGGCGGC TGCAGCGGAT GCGGCGAGGG CGTACTCCGC 
GGCGGCGAAG GAGATGACTG TCCGTGAAGC GCTGAACTCT GCACTCGATG 
AAGAAATGTC TGCTGATCCT TCTGTTTTTC TGATGGGTGA AGAGGTGGGA 
GAGTATCAAG GTGCATACAA GATTTCAAAG GGCTTGCTTG ACAAGTATGG 
TCCTGAGAGG GTTCTGGATA CACCAATCAC AGAGGCTGGG TTTACTGGCA 
TTGCTGTTGG TGCAGCGTAT CAAGGTCTTC GACCTGTTGT AGAGTTCATG 
ACATTCAATT TCTCAATGCA GGCAATTGAT CATATCATCA ATTCAGCTGC 
CAAGTCAAAC TACATGTCAG CGGGTCAGAT ATCTGTCCCT ATTGTTTTCA 
GAGGACCTAA TGGAGCTGCT GCTGGAGTTG GCGCTCAACA CTCGCAGTGT 
TATGCGGCTT GGTATGCACA TGTTCCGGGT CTTAAGGTTC TGGTTCCATA 
TTCTGCAGAA GATGCTCGTG GCTTGCTCAA AGCTGCGATT AGGGATCCGG 
ACCCTGTTGT TTTCTTGGAA AATGAACTGC TCTATGGAGA ATCATTCCCT 
ATTTCTGCTG AAGTGCTTGA TTCTAGTTTC GCTCTGCCAA TTGGCAAAGC 
AAAGATAGAG CGTGAGGGTA AAGATGTTAC AATTACTGCA TACTCCAAGA 
TGGTTGGATA TGCTCTTCAG GCCGCAGATA TATTGTCCAA AGAAGGAATC 
AGTGCTGAGG TGATAAACCT TCGTTCAATT AGACCACTTG ATAGAGCTAC 
TATCAATGCA TCTGTTAGAA AAACAAATAG ATTGGTGACC ATTGAGGAAA 
GCTTCCCACA GCATGGGATT GGTGCTGAGA TATGCATGTC TGTTGTTGAG 
GAAAGCTTTG AATATCTTGA TGCACCAGTT GAGAGAATTG CTGGAGCTGA 
TGTACCCATG CCCTATGCTG CCAATCTTGA GAGGATGGCT GTCCCACAGG 
TTGACGATAT TGTCCGTGCA GCGAAGCGTG CGTGCTACAG AGCGGTGCCC 
ATGGCAGCAA CTGCCTGATA GGAGAGACCT CTTTTACATC ATCTTTCTTT 
TCCCGTCCGG CCAACATATG ATTCATAATG GTGTCCAACA ATTGCCCAAA 
CTCAAAGCGA GCTAATTTTG CAAGATATTT CCATGACCCC CACCTATTCT 
TTTAGCTGCA GTTGCATCAC TGCGTTCGTT GGTGGTGACC CAAATTTCCC 
TCTTTTTTTT TGGTGTGTAT GCGAGAATTA TGCAGCTTAT GGTGATTGGT 
TCACAGTACA CACTGGCGCT AGTTACATAA ATGAAAGAAA AATCTGAGCT 
CTTGATGG

Gene models with high sequence identity

AT5G50850.1 [+] show detail - Transketolase family protein
E-value: 1e-166; Score: 583.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Transketolase-like, pyrimidine-binding domain	2.1e-64
HMMPfam	Transketolase-like, pyrimidine-binding domain	1.8e-48
HMMPfam	Transketolase, C-terminal	9.6e-41
HMMPanther	PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUB	4.3e-207
HMMPanther	DEHYDROGENASE RELATED	4.3e-207
superfamily	Thiamin diphosphate-binding fold (THDP-bindin	1.8e-71
superfamily	Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II	9.5e-48
Gene3D	no description	7.4e-79
Gene3D	Transketolase-like, C-terminal	4.4e-43

See the detailed result >

AT5G50850.1

Model type: Protein coding
Short Description: Transketolase family protein
Computational Description: MACCI-BOU (MAB1); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity; INVOLVED IN: defense response to bacterium; LOCATED IN: mitochondrion, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase E1 beta (TAIR:AT1G30120.1); Has 17839 Blast hits to 17830 proteins in 2804 species: Archae - 215; Bacteria - 11375; Metazoa - 619; Fungi - 227; Plants - 405; Viruses - 0; Other Eukaryotes - 4998 (source: NCBI BLink).
Link: InterPro Scan - TAIR