K22033

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22033

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22033

Determination of introduced cDNA(s)

  • J023023M16 - Rice Full-length cDNAs - Original: J023023M16

    full reading [+] show sequence

    Nucleotide sequence: J023023M16 - full reading 
    GGTGTGTTTC ACTCGAAGGC TCGCTCCACT CGAAGACCGA GGCGTCCACC 
    ACCACCACCA CCACTCGAGT TCCCCCACGA TCCCCAACCC TTCCTCCTCC 
    GATTCGCCGC CGGTAGCTGC CAGCGTCTGC TCCCCGGCTC GCCGCGCGCC 
    GGCCGGCGAG TGCACCGCGC GCGGGCGCTT GGTCGACGCT ATCTCCGGAG 
    TACTCCGCGT GGATTTGGGT GAATAGTGGC TCGTTTCGAC AGGGTGACTT 
    GTGCTGTGCT CGATCGCGGT CGTCGCTTGC TGTTGATCGA CCGGTCCAGA 
    TCCGCGTCGT TTACACGGTG CGTGGCTGTT CCTCAATCTA CGGATCGGAC 
    CTCGGACTCA TGGAGAACCG CGTCGGTGAG TCGTCGGCGA CCGCCGTCGA 
    TGGCGGCGGC GGCGCCAAGG ACTCGGGCAG CTTCGAGTGC AACATCTGCC 
    TGGAGCTAGC CCAGGACCCC GTCGTCACCC TCTGCGGCCA CCTCTTCTGC 
    TGGCCGTGCC TCTACGAGTG GCTCCACGTC CACGCGCACT CCCGCGAGTG 
    CCCCGTCTGC AAGGCCGGCC TCGAGGAGGA GAAGCTCGTC CCCCTCTACG 
    GCCGCGGCAA GGCCTCCACC GATCCCCGCT CCAGGTCGGT GGCCGGCGTC 
    CAGATCCCCA GCCGGCCGGC CGGGCAGCGG CCGGCGACGG CTTCCCAGCC 
    TGATCATCAC CACGACCATT TGCCGCACCA CGACCCGTGG TTCATGGGCG 
    GCGCCGGCGC CCCTGTGGCC GGCGGTCGCT GGGGGAACTA CACTTTCTCG 
    GCGGCCATTG GGGGGCTTTT CCCATTGCTG AGCTTCCAGG TTCATGGGTT 
    CCCGCAGGCG GCGGCGTATG GACCTGCCGC TGGGTTTCCT TACGGGTATG 
    GACATTCGTT CCATGGCTGG CATGGCCATG GTTTCCCGCA CCAGGCACCG 
    CAGGGCCAGC ATGTTGATGT GTTCTTGAAG GTATTGCTTG TTCTGGTTGG 
    TGTTCTTGTG ATTGCCAGCT TGATTGTGTT TTAGATGTGT GCAGTTAGCT 
    ATGGCCAATC CTCGGTGATG AGCCTGTATG AAACGGTTTT ATTGTGTCAA 
    TATTAGGTAG TAGCTCCCAC GGGTTGATCA GTGTGGAGAG ATAGTACAAA 
    GATGATGCTT CAGTAGTTAC TAGTAGGATT CTGTGATAAT GAGTGGTAGC 
    TGATAATGTT GTCGTGCTTC TCGATATATT ACTTGTGCAG TTGCAAGTCT 
    TGTTTGTAGT TTTTAAGTGA AGTTTGAATC CTTGTTATCT TTTCATAATG 
    CATTTGCATT CCAACCTTGT CCTGTGGCTG TCGCAAGGAT AATATCTTGC 
    ATTATTTGTG TCATATATGG ATTCTTGATT GT

    Gene models with high sequence identity

    1. AT1G19310.1 [+] show detail - RING/U-box superfamily protein
      E-value: 3e-49; Score: 192.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-type 1e-08
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMPanther RNF5 1.9e-47
    HMMPfam Zinc finger, C3HC4 RING-type 2.6e-06
    superfamily RING/U-box 7.1e-18
    ProfileScan Zinc finger, RING-type 13.463
    Gene3D no description 7e-16

    See the detailed result >

    AT1G19310.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR