K22118

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22118

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22118

Determination of introduced cDNA(s)

  • J033127O12 - Rice Full-length cDNAs - Original: J033127O12

    full reading [+] show sequence

    Nucleotide sequence: J033127O12 - full reading 
    GGTCGTCATT ACACGCGGAC TCGTCCTCCG CCGCCGCCGC CGCCGCGCAG 
    ACACCTCCTG CCCCGCCGCC GCCGGCGATC TACACCGGGG GCGCGCTTGG 
    AGATTTTTTC TATGGCGGGG AGCAGCGAGA GCGACTACTA CTCGGAGGAG 
    GAGGAGGAGC TGGGATGGGA GGAGGACGGT CTCGGCAGCG AAGGCGAGGA 
    GGAGGACGCG GAGGCGGCGA GGGAGCGGGC GCTGAAGCGG CTGGACGGCC 
    TCGGGAAGCG CGGGGTGTGC TACCTCAGCC GCGTCCCTCC CAACATGAAC 
    CCGTCCCACG TCCGCCAGAT GCTCTCCAAG TATGGCGAGG TGCAGAGGAT 
    TTACCTTGTG CCTGAAGGCC AAGGTCATCG CAAGCACACT AATGTTCGAG 
    CGAAGGCGTA CACTGAAGGG TGGATTGAAT TTTCCAAGAA AAGCGTTGCC 
    AAGAGGGTGG CTAATCTACT TAACGGTGAA CAAATAGGTG GGAAGAAGAG 
    GTCTCCATTT TATTATGACA TTTGGAACAT AAAATATCTC AAGAAATTCA 
    AATGGGATGA TCTTGTTGGT GAAATAGCTG AGAAGACTCA TATCAGGGAG 
    CAGAAACTAA ACTTGGAGAT AGCAGCTGCA AAGAAACAAC GTGACCACTA 
    CTTGTCCAAT GTCGAGAAGT CCCGTACGCT GAAACATATT CAGGAGCGTA 
    GGAAAAAGAA ACAGAAGACG GAAGGAGCTG AATTCAATGA AGTCCGAGAA 
    GAAAAAATCG CTCGCACAAT TCCGCAAAAG AAACCTGTTG AGGAGACAGA 
    CGCCAAAACT AAACCAAAGC TTCCGAAAGA CATTTTAGCC GGAGTATTTG 
    GTGGTCCATA GTGAGTTCAT TCATGAATGC TTCCCACCCC TTACCTTGGA 
    CTGGAGTATA GCAAACTGAA TGGAGTTGCG CTGAGATAAT CGTCTTCTTC 
    ATCCGTTCAT CGTCTGCTTT ATTTTTGTAG ATTAGGTCAT GGTCTTTAGT 
    AACTTGGTTC CTACTTCCTA CCTTGAGTAT CTTTTCGTAT TTATGCTGTG 
    TTAGGGAAGG TTTTGGGACC TGACGATGAA TGTATGATTG GGGTATTGTC 
    AGTGTCATAT TATGCACCCC TGTTTTCTCA GCGATCATGG CTGTAATACT 
    GAAACAGAGT TACAGAAGTA CACTGCTCTA GCTTGAAGCA ACACACTAAT 
    GTACCTTGAA GGCTGGTATT AGTTGATCTT GGTTTTGT

    Gene models with high sequence identity

    1. AT3G56510.2 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 2e-57; Score: 220.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUBFAMILY NOT NAMED 3.5e-70
    HMMPanther FAMILY NOT NAMED 3.5e-70
    HMMPfam RNA recognition motif, RNP-1 6.5e-06
    superfamily RNA-binding domain, RBD 5.7e-08
    ProfileScan RNA recognition motif, RNP-1 9.542

    See the detailed result >

    AT3G56510.2

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: TATA-binding protein binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR