K22132

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22132

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22132

Determination of introduced cDNA(s)

  • J023007H03 - Rice Full-length cDNAs - Original: J023007H03

    full reading [+] show sequence

    Nucleotide sequence: J023007H03 - full reading 
    GAGTCGTCTC CTTCGTCCTC CACTTCCCCC TCCCACCCAA AGACGCGCAG 
    CCAAATCCGA CGCGTGCGGC GGTGCGACGC CGGCCGGGGT GGGGGACGCC 
    ATGAGCCGCA CGCTCCTCTC CCACATCCTC CACCGCCCGC CGCCGCTCCT 
    CGCGTCGAGG GGTGGTGGGC GAGGAGGAGC GCTCCCGTCC CGCCTCCGCA 
    CTCTCCGACT CAACTGCAGC GTGGCTGAAG CGACTGCCTC CGGCGACGAG 
    GCGCCTGCTC CTCCGGCTAG GAAGAAAAGA GTAGTTTCTG GTGTACAGCC 
    AACAGGATTG GTACACCTTG GAAATTATCT TGGTGCTATT AAGAATTGGG 
    TTTCACTTCA GGATCTATAC GAGACATTAT TTTTCATTGT GGACTTGCAT 
    GCGATTACGT TACCATATGA AGCACCACAG TTGTCAAAAG CAACAAGAAG 
    CACTGCTGCA ATATATCTGG CTTGTGGCAT TGACAGTTCA AAGGCTTCTA 
    TATTTGTACA GTCTCATGTC CGTGCTCATG TTGAGTTGAT GTGGCTTCTG 
    AGTTCTTCTA CTCCTATTGG TTGGCTCAAC AGAATGATCC AATTCAAAGA 
    GAAGTCACGC AAGGCGGGTG ATGAAAATGT TGGAGTGGCA CTTTTGACTT 
    ATCCTGTTTT AATGGCTTCT GACATTCTCC TGTACCAGTC CGATCTGGTG 
    CCTGTTGGTG AAGATCAGAC ACAACATTTG GAATTAACTC GCGAAATCGC 
    TGAGCGTGTA AATAATCTAT ACGGTGGAAG GAAATGGAAG AAAATGGGAG 
    GGAGAGGTGG TTCACTATTT AAGGTTCCTG AAGCCCTTAT ACCTCCAGCA 
    GGGGCTCGTG TTATGTCCTT AACCGACGGT CTCTCCAAGA TGTCGAAGTC 
    TGCTCCTTCA GATCAGTCTC GTATTAACCT TCTTGATCCA AAAGATGTTA 
    TCATGAATAA GATTAAGCGC TGCAAAACTG ACTCGTTCCC AGGCTTGGAA 
    TTTGACAACC CAGAGAGGCC TGAATGCAAC AATCTTCTCT CGATCTACCA 
    GATTATTACA GGGAAAACTA AAGAGGAAGT TATCAGAGAA TGCGAAAATA 
    TGAACTGGGG GTCGTTCAAA ACAACTCTTA CAGATGCATT GATTGATCAT 
    CTGCAACCTA TCCAGGCCCG CTACGAGGAG ATAATGTCTG ATCCTGGTTA 
    TTTGGATGGT GTTCTCTTAG AAGGATCAGG AAAAGCTGCT GAGATAGCAG 
    ACATCACCCT CAACAACGTA TACCAAGCCA TGGGTTTCTT GCGCAGATAG 
    CATGCGCTTC AACCATCCGG AACATTTCAA AGATTTTTTA CGAGGTCAAA 
    AAGTTTTGTT CGGTCTGTGT TACTTTGTTC CCCTTACCAT TGGCCTTAAG 
    ATTGTTTTTA TGCACATATT GGCCTTACTA GATTTACAAG AGCTCCATTC 
    TCCAAATTTT ATAGGAATAT CAATCGTTTT GCTTGATGTT ACGTAGTAGC 
    CTCTTTGTTT CTGGCTCTAC AAAAACCTGT ATGGTCCATT AAATTTCTCA 
    TCTTAATGAC ACTGATTTCT TTG

    Gene models with high sequence identity

    1. AT2G25840.1 [+] show detail - Nucleotidylyl transferase superfamily protein
      E-value: 3e-145; Score: 512.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Tryptophanyl-tRNA synthetase, class Ib 1.5e-109
    FPrintScan Tryptophanyl-tRNA synthetase, class Ib 1.3e-29
    FPrintScan Tryptophanyl-tRNA synthetase, class Ib 1.3e-29
    FPrintScan Tryptophanyl-tRNA synthetase, class Ib 1.3e-29
    FPrintScan Tryptophanyl-tRNA synthetase, class Ib 1.3e-29
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.5e-78
    PatternScan Aminoacyl-tRNA synthetase, class I, conserved site 0
    HMMPfam Aminoacyl-tRNA synthetase, class Ib 2.7e-81
    superfamily Nucleotidylyl transferase 1.8e-111
    HMMTigr Tryptophanyl-tRNA synthetase, class Ib 2.5e-134

    See the detailed result >

    AT2G25840.1

    Model type
    Protein coding
    Short Description
    Nucleotidylyl transferase superfamily protein
    Computational Description
    ovule abortion 4 (OVA4); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding; INVOLVED IN: N-terminal protein myristoylation, tRNA aminoacylation for protein translation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tryptophanyl-tRNA synthetase, class Ib (InterPro:IPR002306), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 9074 Blast hits to 9053 proteins in 2715 species: Archae - 101; Bacteria - 5434; Metazoa - 147; Fungi - 137; Plants - 44; Viruses - 0; Other Eukaryotes - 3211 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR