K22214

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22214

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22214

Determination of introduced cDNA(s)

  • J033099K03 - Rice Full-length cDNAs - Original: J033099K03

    full reading [+] show sequence

    Nucleotide sequence: J033099K03 - full reading 
    GAGTTCTCGA GGCTTCTGTT TCCTCGTCTC TCGTCGTCGT CGGCGGCGGC 
    GGCGGCCATG GAGGACGACG ACGAGTGCCC TCCCCTCGCC GTCGAGCTCT 
    CGCCGGAGAA GCCGTACAGT CCTCCGCCGC TCGGTCCCTC CGCGGCGTCG 
    CCGGTCGGAG TCACCGTCAT CACTGGCTAC CTCGGCGCCG GCAAGTCCAC 
    GTTAGTCAAC TACATTCTAA GTGCGCAACA TGGAAAGAGA ATTGCAGTGA 
    TATTGAATGA GTTTGGAGAG GAAATTGGGG TTGAAAGAGC AATGATCAAT 
    GAGGGGCAAG GTGGCGCGCT TGTTGAAGAG TGGGTGGAGC TGGCAAATGG 
    ATGTGTTTGT TGCACGGTGA AACACAGCCT GGTTCAAGCA CTTGAGCAGC 
    TTGTGCAGAG AAAGGAGAGA ATGGATCACA TATTACTAGA GACAACAGGA 
    TTGGCTGATC CTGCACCTCT TGTCTCTATT CTTTGGCTAG ACGACCAGTT 
    GGAGTCATCA ATTAAACTAG ACTCTATCAT TACGGTTATT GATGCAAAAA 
    ACTTCAGGCT GCAAATTGAT GAGCACAATA AGTCATCATC ATTCCCTGAA 
    GCATTTCATC AAATTGCATT TGCGGATGTT GTGATATTGA ACAAAATTGA 
    CCTAGTAGAA GGCAGTCTTG AGGATTTGGA AAGGCAGATT CATGAAGTCA 
    ACGCTCTTGT TACAGTGGTG CAGTCTGTCC GCTGCCAGGT TGACTTAAAT 
    AAAATATTTG ATCAGCAAGC ATATGGTGCC AAGAATTCAT CGCAGCTGCA 
    AGAACTTCTG GAGTACAGTA AATCAGTACC ACCTAATCTC CGTCATGATA 
    ACAGTATTTC TACCTTGTGT ATTTGTGAGC AGGATCCAAT TTCCCTGTCT 
    AAGGTGGAAT CATGGCTCGA GGATCTTCTT TGGGAAAGGA AGTTGGACAT 
    GGATATTTAT CGTTGTAAAG GGATTTTACA TGTCCATAAC TCGGATCAAG 
    TTCATACATT ACAGGCAGTG AGGGAAGTTT ATGAAGTTCT GCCAGCTCGA 
    GAATGGTCCA AGACAGAATC TCGCACAAAC AAGATAGTTG TCATAGGTCG 
    CAACTTGGAT ATCAATATCC TTCAAGATTC ATTTAGTCGT TGCAAGCACT 
    GATATCGAAG GGTTTGTTCA TCCTGTACCC TGCACCTCCA TGCAATCAAG 
    TACTGCAAGG AGTTTCTATG GCTCCCCGAA GTAATGTGCT TTATGTTTGT 
    CTGTATATCT TCAAAGGTGA CAGTGCTGAC AGCTTCTTGG CAATGAAGTT 
    CTGCACAACG GATGCGATTA TCCGACGCGC CATGTTCAAC TTTGGAAGAG 
    GAACATGCAT CCAGTTACAA GATGATGAAC TACTTGTAGA AGATTTTAGT 
    TAAGAGTAGT ATGCAAACTG ATGATCGGCA ACATTTCTCG TTGTATGGAA 
    CTGACCGAAA GCAATCTTTT TGTAAGAAAC CGATTGGCAA CAATAACATA 
    CTGGGAGTTG AAATCTGATC CTCAAATTCA TGTTTGT

    Gene models with high sequence identity

    1. AT1G26520.1 [+] show detail - Cobalamin biosynthesis CobW-like protein
      E-value: 4e-133; Score: 471.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther COBW DOMAIN CONTAINING (VERTEBRATES) 3.2e-103
    HMMPanther COBW-RELATED 3.2e-103
    Gene3D no description 8e-57
    Gene3D Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal 3.4e-21
    HMMPfam Cobalamin (vitamin B12) biosynthesis CobW-like 7.5e-50
    HMMPfam Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal 1.1e-18
    HMMSmart Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal 1.6e-05
    superfamily P-loop containing nucleoside triphosphate hyd 2.8e-34
    superfamily Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal 3.9e-23
    Coil coiled-coil 0

    See the detailed result >

    AT1G26520.1

    Model type
    Protein coding
    Short Description
    Cobalamin biosynthesis CobW-like protein
    Computational Description
    Cobalamin biosynthesis CobW-like protein; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: Cobalamin biosynthesis CobW-like protein (TAIR:AT1G15730.1); Has 8517 Blast hits to 8427 proteins in 1716 species: Archae - 88; Bacteria - 6047; Metazoa - 151; Fungi - 280; Plants - 232; Viruses - 0; Other Eukaryotes - 1719 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR