K22322

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22322

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22322

Determination of introduced cDNA(s)

  • J013075A01 - Rice Full-length cDNAs - Original: J013075A01

    full reading [+] show sequence

    Nucleotide sequence: J013075A01 - full reading 
    GGCTTAAACC CAAGCTCTGG CTCTCTCGGT AGGTTGCCCT CGACCTCCCA 
    CCCCTTCCAT GGCCGCGCCG GGCGCGTGCC TGGCGTCGCG CTCGCCACCC 
    GCCTTCCTCG CCGGCGGGTT CCTCGCTGCC CGCCCTGCCG CCGTCTCTCC 
    CATCCCCTCC CGCTCCGGGA AATCAATCGC ACCGAGCCGA CGCTTTATCG 
    TGTCTAATAA ACTTGCTTGG GTTGAAGATG AGTTAGTGGA GATAACAGAG 
    TCACAAGAGC CAAGCTCCGC AAGTTCAAAG AAAAGGCCAC CTTTGAGGCG 
    TGGGAAAATC TCTCCACAAC TTCCGGTGCC AGAACACATT CCGAGACCAT 
    CTTATGTAGG TTCGAATAGA CCGCAAGAAC TATCTAGTGT GCGCCAAATA 
    CACAGTGCTG AAGGTATCGC TGGAATGAGA GCTGCTTGCA AACTTGCTGC 
    CCGTGCTCTG GACTTTGCTG GAACATTGAT TAAGCCATCA GTTACTACAA 
    ATGAAATTGA CAGGGAAGTG CATAACATGA TAATTGAGGC CGGTGCTTAT 
    CCTTCTCAAC TTGGCTATGG TGGATTTCCT AAAAGTATCT GCACGTCACT 
    AAATGAGTGT GTCTGTCACG GAGTACCTGA CTCAACACAA CTGCAGACCG 
    GAGACATCAT GAATGTTGAT GTAAATGTGT TCCTGAACGG ATACCATGGG 
    GGTGCTTCTA GAACATTTGT ATGTGGAGAA GTGGATGACT CTATCAGGCA 
    TTTTCTGAAG GCAGCTGAAG AATGCTTGGA GAAGGGTATT ACAGTCTGCA 
    GGGATGGTGT CAACTACAAA AAGATTGGCA AGAAAATAAG CAAGCTTGCT 
    TATTTTTACG GCTATTATGT GGTGGATCGT TTTGTTGGAC ATGGGATTGG 
    ACCTATTTGG CATTCTGAGC CACTAATCCT ACATCATGCC AATGACAACT 
    CTGGGCGAAT GGTTGAAGGT CAGACATTTA CAATTGAACC TATTCTTACA 
    ATGGAAAAGG CTGAGACAGT TACATGGGAA GATGGATGGA CTACTGTCAC 
    TGCCGATGGC AGCTGGGCTG CGCAGTTTAA GCATACTGTA CTAGTCACTC 
    GGACAGGGGC TGAAATACTG ACAAAACTTT GACATCTTCT TTATTATGAT 
    AAGAAGTTGT TGGGCCATTT ACCTTGAGCA TGTTTATGTT CATATAACAG 
    CCCCAGCCCC CCGCTAGCAG CCGTATCCTA CCGAAATGTC TCTTTGGTCC 
    ACATGTGGCA GGATTACAGA TCACAGGCTG AAGAGCTGAT CGATGAGATC 
    TGTGATGAAA GTTCTGTACC AGGCGAGTGG CTTGTGCGAA GGGTTTGCGG 
    ATCCTTAGAA TTTTGTGTGT GGCATACTGG CATATGATCA GTTACTGACG 
    TATTGCTAGG CATGTAATGT GTAAATAGTC CTTAATTTGT TTTGTTTCCT 
    CCTTAATACA ACGCCGAATG CTGCAGTCGC TTGCATTGCT GTTGGTTTGC 
    TTGACCTGCT GCAGCCTGTA TACAAATTGC CAATGCCAAG CAGAATCCCC 
    ATCACGAATT CACGATGGGC C

    Gene models with high sequence identity

    1. AT1G13270.1 [+] show detail - methionine aminopeptidase 1B
      E-value: 2e-117; Score: 420.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidase M24, methionine aminopeptidase 1.1e-17
    FPrintScan Peptidase M24, methionine aminopeptidase 1.1e-17
    FPrintScan Peptidase M24, methionine aminopeptidase 1.1e-17
    FPrintScan Peptidase M24, methionine aminopeptidase 1.1e-17
    HMMPfam Peptidase M24, structural domain 4.4e-40
    superfamily Peptidase M24, structural domain 2.7e-79
    HMMTigr Peptidase M24A, methionine aminopeptidase, subfamily 1 2.7e-87
    Gene3D Peptidase M24, structural domain 2.8e-78
    PatternScan Peptidase M24A, methionine aminopeptidase, subfamily 1 0
    HMMPanther Peptidase M24A, methionine aminopeptidase, subfamily 1 7.1e-87
    HMMPanther Peptidase M24, structural domain 7.1e-87

    See the detailed result >

    AT1G13270.1

    Model type
    Protein coding
    Short Description
    methionine aminopeptidase 1B
    Curator Summary
    Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C.
    Computational Description
    methionine aminopeptidase 1B (MAP1C); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 1C (TAIR:AT3G25740.1); Has 18008 Blast hits to 17988 proteins in 2832 species: Archae - 481; Bacteria - 12145; Metazoa - 393; Fungi - 260; Plants - 253; Viruses - 0; Other Eukaryotes - 4476 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR