K22323

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22323

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22323

Determination of introduced cDNA(s)

  • J033095I08 - Rice Full-length cDNAs - Original: J033095I08

    full reading [+] show sequence

    Nucleotide sequence: J033095I08 - full reading 
    GAATTAATCC GATCAAAATT AAAGCCCAAA AGTTGAGATA GCTAGCTAGC 
    TCATCAGGAG AGAGTGAGAG ACAGTATCCA GCTTGCTAGG TAGCTAGCTG 
    CCGTTTGCGT GTTCTTCTTT AATTTCTTCG TCGCATAATC TGTCTCGTCT 
    CTGATAAACT TTTTATCTTC TTTTTTTGGG TGGTCATGCA TGCTGCGGCC 
    AATTCGTTCT TGAATTCGTT AGCTACTCCA TTCCATATAT AGATTCGATC 
    TTGTCCTAGC TAGATACCTA GCTGCTGCTG CTGCTTCTTC TTCTTCCTTG 
    GTGTTGAATT TGGTTCAGCC GCTGCTAGCT ATAGCTTTGC GCGGTGTTCG 
    TAGGGTTAGG GTTTTTGCTG TGTGTTCGAC GATGGCTATG GGAATGGAAG 
    GATCGGGAGG AGGAGGGTCG GCGAAGAAGA AAGAGGAGAG CTTGCCGCCG 
    GGGTTCAGGT TCCACCCGAC GGACGAGGAG CTCATCACCT ACTACCTGCG 
    GCAGAAGATC GCCGACGGCG GCTTCACGGC GAGGGCCATC GCCGAGGTCG 
    ATCTCAACAA GTGCGAGCCA TGGGATCTCC CAGAGAAGGC AAAAATGGGA 
    GAGAAGGAAT GGTACTTCTT TAGCCTAAGG GATCGAAAGT ACCCAACTGG 
    CGTGCGCACA AACCGAGCAA CTAATGCTGG TTATTGGAAA ACAACGGGAA 
    AGGATAAGGA AATCTTCACT GGACAACCAC CAGCAACACC GGAGTTAGTT 
    GGAATGAAGA AAACCCTAGT GTTCTACAAA GGAAGGGCTC CAAGAGGTGA 
    GAAAACCAAT TGGGTCATGC ATGAGTACCG ACTCCACTCC AAATCAATCC 
    CCAAATCAAA CAAGGATGAG TGGGTCGTCT GTCGCATATT TGCCAAGACT 
    GCCGGCGTCA AGAAATACCC CTCCAACAAT GCTCATTCCC GATCCCACCA 
    CCCATACACA CTAGACATGG TCCCACCTCT CCTCCCAGCT CTATTGCAAC 
    AAGACCCATT TGGTCGTGGA CACCACCCTT ACATGAACCC CGTTGACATG 
    GCGGAACTCT CCCGGTTTGC TAGAGGTACG CCGGGGTTGC ACCCACACAT 
    CCAACCACAC CCCGGTTACA TCAACCCGGC TGCGCCTTTT ACACTATCAG 
    GCCTTAACCT CAACCTTGGA TCCTCGCCAG CCATGCCTCC ACCACCACCA 
    CCGCCACCAC AATCCATCCT CCAAGCGATG TCGATGCCGA TGAACCAACC 
    AAGAAGTACT ACAAACCAGG TTATGGTAAC AGAGCAAATG ATTCCAGGAC 
    TAGCCAATGG TGTCATCCCA CAGGGAACAG ATGGAGGTTT TACCACGGAT 
    GTTGTTGTTG GAGGCACTGG CATCAGATAC CAGAATTTGG ATGTAGAGCA 
    GCTGGTGGAG AGGTACTGGC CTGGTAGTTA CCAAATGTAG TCCTGAAGGA 
    AATGCTTGGG GTACTGCCAA GCAATTGTTG GTCTATTATG TAGGAAGACA 
    TAATTATTTG AGCTACCTTA ATTTAGTCTA TGGATATTGT ATGATTACTT 
    AGCTAATGTT GTACCCTTGC TTTTT

    Gene models with high sequence identity

    1. AT2G24430.2 [+] show detail - NAC domain containing protein 38
      E-value: 4e-74; Score: 276.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan No apical meristem (NAM) protein 60.863
    HMMPfam No apical meristem (NAM) protein 8.9e-54
    superfamily No apical meristem (NAM) protein 2.8e-67

    See the detailed result >

    AT2G24430.2

    Model type
    Protein coding
    Short Description
    NAC domain containing protein 38
    Computational Description
    Arabidopsis NAC domain containing protein 39 (ANAC039); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 58 (TAIR:AT3G18400.1); Has 3031 Blast hits to 3023 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 3020; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR