K22333

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22333

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: K22333

Determination of introduced cDNA(s)

  • J023026H03 - Rice Full-length cDNAs - Original: J023026H03

    full reading [+] show sequence

    Nucleotide sequence: J023026H03 - full reading 
    GGCGCACCTA CAGCACCAAG TGTAACCAGA GCTTACACAA AAAAAAAGGC 
    ACCACCTTTG CTCGGTGCTC GTGGGGGAGA GAGAGAGAGA GAGACAGATG 
    GCGACGCGGA TGGCTGCGGC GGTGGCGGCC ATGGTGGCGG CTGTGGCGAT 
    CTCGCTGGCG GCGGGCGGGG CGGCGCAGTC GTCGCCGAGC ACGCCGAGCT 
    GCGCGTCGAA GCTGGTGCCG TGCGCGCAGT ACATGAACGG GACGGACACG 
    CCGCCGGCGG CGTGCTGCGA CCCGCTCAAG GAGGCGGTGA AGAACGAGCT 
    CAAGTGCCTC TGCGACCTCT ACGCCTCGCC GGAGATCTTC AAGGCCTTCA 
    ACATCAACAT CTCCGACGCC CTCCGCCTCT CCACGCGGTG CGGCATCAGC 
    CAGACCACCA GCATGTGCCC CGGTAACCAA CTTATTTTAC CCTCCTCCTC 
    CTCCTTCTAT CCCTTGTTCT TTTAACAGCA AAAGAGAGAG AGAGAGAGAG 
    AGAATATGTT GTTTTTGATA GAAATTATCA CCGTGGCATC GATCATGAGT 
    TGTTAATTTT TGTAATATTG GTATCCAAAA ACTCACCCAA ATAGCATGAT 
    TTGACTGTTC CTACACTGAA TAAATATGAG GCCTTGTTCT TGCTAATGCA 
    TTGTTTGCCT GGTTGATGGA ATGATGGTTT GCACATCGAA GTCACTGCAC 
    TGTGGTTGAA GAAATAAATC CGGTTAGGAT GTTTTAAACA AACGGCCGCA 
    TAAACTGTTC TTACTGCCAT GTATAATGTC ATATTTCTAG TGACAAGTCG 
    ATGTAATTAA CACAAATTTG TCCGGCGAAA AAAAAAAGGT AATTACTACA 
    AATTTGGGAA AGTAAAGGAA TGTTTTTGCC TTTTTGTTGC ATAAGTCAAT 
    AAGTGGCGTA GGGAAGTTGG CTTTGCATTT CTGTCTCTAT CAGGGCAAAA 
    CGAAACAAAG AAAAAACATT TAGGTGTGAA TATAAGACCA AGCTCCATGA 
    TTTGGGTCGA CCAGAAGTTT GTAGGCATCC AGATTCCTGT TTTTTGCTTC 
    CCCAGTCCTG TCCTGTAATA ATCGTAGTTT AATCTGAAGA CGCAACGATG 
    TCAGATTATA CCAGTTCGCC TTGGGTATAA TACTAGTTGA ATGATTAGTC 
    TCAGCCTACC GTTGGATATA GTATTGTAGC CATTTCACAT TTGGGATGAT 
    GTTTATAAAT CAACTAGGAA AATAGCTAAT TTCTTTGACC TGATGAAATG 
    GAACCATGAA ACTTAATCTA GATTTGTTTA GCACTGTTTT GTTGTGCTGG 
    TAACTTTTAC CAAACATCAT TACAAAATTC ATTTTTTTTT GGAAGTCACA 
    CCAGTTCGCT ACTATATCTG TTGTATTTGG CAACCGTCCT TTTCCTTAGA 
    TAATTTTAAT ACATATATTT GTATGGTTTT CTGATAAGTG TCCTACAATA 
    ATATTTTGCA GGGAATTCCC CTACGAACTC TCCTCCAGCC TCTCCATCAG 
    GTGGCAAAAA CGCTGGTCAT CGCACTATGT CAGTTGGTCT TCCAGGATTG 
    ATGAGCTTGT TCCTAGCGTT GTGGTCTGTA TTGGCATAAG AATTTTGGTT 
    CCATATCAGA GATGTTATCG CTTATGCCAC AGTAGAGGAT TTACATGTGA 
    CGGTGTTTGT TGATTGGCTG TATCATCATT CTGTACTTGG ATCAGAATTC 
    GTTTTGCTGT GTATCAATGT CGCAAGTCAG AAGACTTACA TTGTGTTGTA 
    CTTAGACCTG TGCTGATCAA AGCGTAATGG ATGAATTGTT TATCTTCT

    Gene models with high sequence identity

    1. AT1G62790.2 [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
      E-value: 2e-15; Score: 81.30

     

    InterPro Scan Digest

    See the detailed result >

    AT1G62790.2

    Model type
    Protein coding
    Short Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
    Computational Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: receptor serine/threonine kinase, putative (TAIR:AT1G70250.1); Has 314 Blast hits to 310 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 314; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR