K22335

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22335

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22335

Determination of introduced cDNA(s)

  • J013157F12 - Rice Full-length cDNAs - Original: J013157F12

    full reading [+] show sequence

    Nucleotide sequence: J013157F12 - full reading 
    TGGCCGCCGC CACCGCCGCC CGCCACCTCG CCGCCGACCA GACGAGCCGC 
    CGTTTGACCC AACACCGAGC TCCCGCGCGG AGTTGATGTC CATCTCCCCT 
    TCCGAATCCA CCAGAGGATC CCAGCCGCTC GCGCCGCGCC ATTCCAACCC 
    TAGCCCCGGA CCCCGCCATG GCAACAGCTC CGCCCCACCG CGCCGCCGCG 
    GCCGACGCTC CCCTACGGCT CCCGTCTCAC CGCCCTCAGC CGCCGGCGGG 
    AGCGGCGGCC CGAGCTCCGT CTCGGTGGTT CCAGCTATCA GAGAATATGT 
    TGATACTTCC CAAAAGGTAG TTGGATTCAG AATCTCTAGA GAAGAGAATG 
    ATGATTCATA TACCCAAGAA GTTGGCAATT TTTCTGAATG CCACTCTTCT 
    GAACATGGGA ATTCAGGTTT TTCAGCCAAT AATGGCACCT CAGGCCAGGC 
    AACTCCTCAG AGACCTGAAT TGATGGAATC CCTGAAGATT GATCTATCCA 
    CTACAAATTC TAGTGGGAAT GGTACTCAGG TGACTGCTAG AAAGAATCAG 
    TCTGTAAATG CCAATTATCT GCTGAATTTC CACTATGATC CAATTTCTCG 
    GCCACAGCCT AGAGGCCCCA GAACATATCC TACAAGAAGA CAGAGGAAGA 
    TCAGACCATA CAACAAAGAT TTGTTCCTAC AAGCAAATTT TAAGTTTGTT 
    GTGTTGGATA CTGGAAGCTA TGAAATAGAA TTAATGGATC CAGATAAGAT 
    GCTCCAGTGG GAAGATATTG TATGTGTAAG ATATTATAGC CCTTGTGAGG 
    TGCAATGCCC TATTTGCTTG GAGAGCCCAT TGTGCCCACA GATTACATCA 
    TGTGGTCATA TATATTGCTT TCCATGCATT TTACGTTATT TACTTATGGG 
    AAAAGAAGAT TACAAAGGTG AAAGCTGGAA GAAGTGCCCA CTGTGTTTCA 
    TGATGATCTC AACAAAGGAG TTGTATACAA TCTATATTAC TCAAGTCCAG 
    CATTTTCATG TTGGTGACAA TGTGACATTT ACACTTTTGA GCCGCTCAAA 
    AAATTCACTC ACTCCTTCTA TTAAGAACCT CACTGATGAA TCTACTATAG 
    ACGAAGATCC TTGCAGTGCA TTCTCCAAGT TCATTTTGAC GTCTGATGTG 
    GAACTTTCTG TTAGAGAGGC AAAAACAGAT CTTGTTAATT GGTTGCATAT 
    GGCAGATTTA GGCCTTGTGG GTGACTTGGA GAAACTTCCA TACGTTTCTA 
    CCGCTTTGGA GCAGCTAGAA GAACGGATGA AATATTGGAG TGAGTACAGA 
    AATTTTAGTG TCAGCCCTCC CCTAAAAGAC AGCTTCTCAC CTGTAACTAG 
    TTCCAAATCA AGGAACCCTA ATAATGCACA ATCTTCACGC CAGAACAGTG 
    AACACAAGCT ATCTCCTCTA TCAGATGAAG ATATGATTGC TGGTGTTTCG 
    GAGCTCTGTA TTTCACCTGA ATCAAATAAA ATCTTTAATA AAGGAATGCC 
    ATCGAAAACA GAAGAGAGAT GTATGGCTCC CATAGATTCA AATGAGAATG 
    ATACTTATAA TTTTTACCAG GTATCTGATG GCCAACACCT AATTCTTCAT 
    CCGCTAAACA TGAAATGCCT TATAAACCAT TATGGAAGTT CTGATATGCT 
    CCCACCAAGA ATACATGGAA AAATCTTGGA GCTAGAAACT GTAACACAAT 
    CCGAAGCTAC AAGAAAGCGC TATCGTTATC TAAGTCACTT CTCATTGACA 
    ACAACGTTCC AGTTCTGTGA AATTGACCTG GGTGATATGC TGCCTCCTAG 
    CTCATTAGCT CCATTCATGG ATGAAATCAA GAAGCGAGAG AAACAGAGGA 
    AACGAACTGC CAAGAAGGAA GAAAGCGATA GAGTGAAAGC CGAAGTTGCT 
    GCTGCTGCAC AGGCATCTGC AATGCTGTTT GAACATACAA GCTTCTCTCC 
    CAGTAGTGGG CCACATGGCG ATTTTATGTT CTCTCTGGAT GACTTTGAAG 
    CTCTTGGAAA CAATGCTGGA CCCTCCACGA GTCCACCAGC CAGCGAAAGA 
    AAGCTTTTCT CCGATGTTGC ACGGCTTGGC TTTGCGTCTG CCCAAGACTC 
    GCCTCCTCTA AGAGTTGAAT CTGGGGATTT GACTGGCAAA AGTGAAAGCA 
    CGGGGGAACA AGGGCCAGCC GCAACACCCG CATTATCCTT TGCCAGCATC 
    ATTTCCTCCA CTAGAGCGTC AGACAATAGC CTGGACACGC ACAAACCAAA 
    TGTAGTCGGG AAGAAAGGCA AGAAACCCAC CAAAGTGCTC TTGTCCACTG 
    GCGGTGGCCG CCGATACTGA AGGAAGAGTG ACACTGGAAT GGAAGCAGTT 
    GCCAGTTGGC TGTTTCCTAT AAGCAGTGTG TATAGTGCAT AACCTGGACT 
    TCACATCTGT AACACTCCCA AGTCCCAAGT AGCAGCTTTT TCTCCCATGT 
    GGTTTGATCT AAATCGCCTG ACTGTTTTAG AAGGTTTTTT ACTGTGTATC 
    TACATCCTGA CCCATGCTAA GGGAGTAAGG GTGACTGCCC TGTCGCAAAA 
    TGAGAAGAGC TATGTAAAAT TTGATAAATA ATGATGCTAA GGATCATGCG 
    CAATACTTTG CTCAATGTAC GTCGACGAGT TGATCCGTCA TAGGCTGATA 
    CAGCCTGCTG TTTAAATCGT G

    Gene models with high sequence identity

    1. AT3G26730.1 [+] show detail - RING/U-box superfamily protein
      E-value: 2e-147; Score: 520.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 4.3e-12
    HMMSmart Zinc finger, RING-type 6.7e-08
    PatternScan Zinc finger, RING-type, conserved site 0
    Gene3D no description 2.4e-10
    HMMPanther PUTATIVE RING FINGER PROTEIN 2.1e-05
    HMMPanther RING FINGER PROTEIN 4 2.1e-05
    ProfileScan Zinc finger, RING-type 11.516
    Coil coiled-coil 0

    See the detailed result >

    AT3G26730.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); Has 5292 Blast hits to 2238 proteins in 281 species: Archae - 3; Bacteria - 121; Metazoa - 1602; Fungi - 487; Plants - 437; Viruses - 6; Other Eukaryotes - 2636 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR