K22341

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22341

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22341

Determination of introduced cDNA(s)

  • J013155E12 - Rice Full-length cDNAs - Original: J013155E12

    full reading [+] show sequence

    Nucleotide sequence: J013155E12 - full reading 
    GCGTGGCAAA TCCATCCATC CATCGCCTCT GCCTCGCCTC CACCACCGAG 
    ATGCCGGGGC TCACCGCGCC GGCGAGCTAC TCCGACGAGC CGCCTCGCCA 
    CCCCGCCCTC AAGATCAACT CCAAGGAACC ATTTAATGCT GAGCCTCATC 
    GATCAGCATT AGTTTCATCT TATATTACCC CGGTGGATTT CTTCTACAAG 
    AGAAACCATG GACCGATACC AATTGTGGAT GACCTCTCAA GATACAGTGT 
    TTCCATTACT GGTATTGTCA ACAAGAATGT GCAGCTGTCC ATGGCTGACA 
    TTAGGAGTCT CCCAAAGTAT GATGTAACTG CAACGTTACA GTGTGCAGGC 
    AACAGGAGGA CTGCAATGAG TAAGGTACGG AAAGTGAGAG GCGTTGGGTG 
    GGACATATCT GCTCTTGGAA ATGCAACATG GGGAGGAGCA AAGCTATCTG 
    ATGTCCTTGA ACTAGTTGGA ATACCTAAAC TCAGCTCAGT CACATCTTTA 
    GGAGGCAAGC ATGTTGAGTT TGTCAGTGTT GACAGGTGCA AAGAAGAAAA 
    AGGTGGTCCC TATAAGGCAT CAATTCAACT AAAGCAGGCA ACAGATCCTG 
    AAGCTGATGT GTTACTTGCA TACGAAATGA ACGGAGAGAC CCTAAACCGT 
    GATCATGGAT ACCCACTTCG TGTTGTTGTA CCTGGAGTAA TTGGCGCACG 
    CTCTGTAAAA TGGCTTGACA GTATCAACAT AATTGAAGAA GAATGCCAGG 
    GTTTTTTTGT GCAAAAAGAT TACAAGATGT TTCCACCCTC CGTAGACTGG 
    GACAATATTA ATTGGTCAAC TAGGAGGCCA CAAATGGATT TCCCTGTGCA 
    GTCTGCTATT TGTACCCTGG AGGATGTGGA TGTTATCAAG GAAGGGAAGG 
    CTAGGATTGC TGGATATGCA GTCTCAGGTG GTGGCCGTGG CATTGAGAGA 
    GTTGATATAT CTGTCGATGG GGGGAAAACA TGGGTCGAGG CTCATAGATA 
    TCAGAAAAGC AACGTGCCAT ACATATCTGA TGGACCTCGG AGTGATAAGT 
    GGGCATGGGT TCTATTCGAG GCTACATTAG ACGTTCCAGC AAACGCTGAG 
    ATAGTAGCTA AGGCGGTGGA CTCAGCAGCA AATGTTCAAC CTGAAAAGGT 
    GGAAGACGTA TGGAACCTGA GAGGAATCCT CAACACATCT TGGCATCGGA 
    TCAAAATACA GAATTCTTCG TGCGTGGGAA GATCCAAAAT GTGAAATAAG 
    TAAACTGCTT GGAATCAGAA GTCAAGAGTT TATAGTGCCC GGAATAATAA 
    GTTATTGCAG CATTCGATGA TTCTCGCAGA CTGTGCTCCT GTACTATAGT 
    ACTATGTTGG AATCGTGTTG CTGGCCTGGG CTTATATGAG ACGAAACACA 
    ATTTTTGGGA GTGATGTTAA GAAGATGATT AATACGTACT CCAGTATTTA 
    TGTTGTCTTC TAATGGAAAA TTTGCAGTTC TTGTGCTCCA TATGATAAAA 
    GAAAAAACTC AGTAAATTCA GTTGCAAAGA TGTGACAAGA CATTAACATC 
    C

    Gene models with high sequence identity

    1. AT3G01910.1 [+] show detail - sulfite oxidase
      E-value: 0; Score: 638.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Eukaryotic molybdopterin oxidoreductase 2.5e-56
    FPrintScan Eukaryotic molybdopterin oxidoreductase 2.5e-56
    FPrintScan Eukaryotic molybdopterin oxidoreductase 2.5e-56
    FPrintScan Eukaryotic molybdopterin oxidoreductase 2.5e-56
    FPrintScan Eukaryotic molybdopterin oxidoreductase 2.5e-56
    FPrintScan Eukaryotic molybdopterin oxidoreductase 2.5e-56
    FPrintScan Eukaryotic molybdopterin oxidoreductase 2.5e-56
    FPrintScan Eukaryotic molybdopterin oxidoreductase 2.5e-56
    FPrintScan Eukaryotic molybdopterin oxidoreductase 2.5e-56
    FPrintScan Eukaryotic molybdopterin oxidoreductase 2.5e-56
    FPrintScan Eukaryotic molybdopterin oxidoreductase 2.5e-56
    FPrintScan Eukaryotic molybdopterin oxidoreductase 2.5e-56
    superfamily Oxidoreductase, molybdopterin-binding domain 3.2e-78
    superfamily Immunoglobulin E-set 5.1e-37
    HMMPanther SULFITE REDUCTASE 8.7e-152
    HMMPfam Oxidoreductase, molybdopterin-binding domain 1.2e-52
    HMMPfam Moybdenum cofactor oxidoreductase, dimerisation 8.4e-36
    Gene3D Oxidoreductase, molybdopterin-binding domain 2.7e-80
    Gene3D Moybdenum cofactor oxidoreductase, dimerisation 1.4e-37

    See the detailed result >

    AT3G01910.1

    Model type
    Protein coding
    Short Description
    sulfite oxidase
    Curator Summary
    Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.
    Computational Description
    sulfite oxidase (SOX); FUNCTIONS IN: sulfite oxidase activity; INVOLVED IN: sulfur metabolic process, response to sulfur dioxide, chlorophyll metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066), Oxidoreductase, molybdopterin-binding domain (InterPro:IPR000572); BEST Arabidopsis thaliana protein match is: nitrate reductase 1 (TAIR:AT1G77760.1); Has 4198 Blast hits to 4195 proteins in 919 species: Archae - 144; Bacteria - 2268; Metazoa - 143; Fungi - 280; Plants - 245; Viruses - 0; Other Eukaryotes - 1118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR