K22344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22344

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22344

Determination of introduced cDNA(s)

  • J013049N23 - Rice Full-length cDNAs - Original: J013049N23

    full reading [+] show sequence

    Nucleotide sequence: J013049N23 - full reading 
    GGGACTCGTG GCGATCCTGA GCTTCTTTGG GCGTCGAATT CCTGTGGTGC 
    GCGGCCGGCG TGGTGCGTTG CTTGATGCTG ACGGATAGGT GGGGAGGGAG 
    GAGGGAGGCG ATGGAGTTCG GGAACGGCGG GTCCTCCTCG TCGGAGCGCA 
    GGGCGGCGGC GGAGGGGGCG ACGCTGGCGA GACAGGGTTC GGTGTATTCG 
    CTGACGTTCG ACGAGTTCCA GAGCGCGCTC GCTGGTGGCG GCGGCGGCGG 
    CGGTGGTGGA AGCGGGTTCG GGAAGGACTT CGGCTCCATG AACATGGACG 
    AGCTGCTCCG GAGCATCTGG ACCGCGGAGG AGAGCCAGGC CATGGCCTCC 
    GCCTCTGGCT CCGCCGCGGG GGTGGGCGTG GCCGTGGGGG CGCCGCCGAC 
    GTCGCTGCAG CGCCAGGGCT CGCTCACCCT GCCCCGCACG CTCAGCGCCA 
    AGACGGTGGA CGAGGTATGG CGCAACCTTG TGCGCGACGA GCCACCGCCG 
    GTGGGGGCGG CGGATGGCGG CGATATGCCA CCCCAGCGGC AGTCGACCCT 
    CGGGGAGATG ACCCTGGAGG AGTTCTTGGT CAGAGCCGGC GTGGTCCGAG 
    AAAATCCACC CGCTGCGCCG CCCCCCGTTC CCCCGCCAAT GCCGCCGCGG 
    CCAGTCCCGG TGGTCCCCAA GACCACTGCC TTCTTGGGAA ACTTCCCCGG 
    TGCCAACGAT GCCGGCGCGG CGGCGCTGGG CTTTGCGCCG CTCGGCATGG 
    GGGATCCAGC CTTGGGCAAT GGCCTGATGC CCAGGGCAGT GCCAGTGGGC 
    TTGCCTGGCG CCGCCGTCGC TATGCAAACA GCGGTGAACC AGTTTGATTC 
    TGGCGATAAG GGGAACAGCG ACCTGTCATC GCCGACGGAG CCAATGCCTT 
    ATTCCTTCGA AGGGTTGGTG AGGGGGAGAA GGAACGGTGG CGGAGTAGAG 
    AAAGTGGTGG AGAGGAGGCA GAGGAGGATG ATCAAGAACA GGGAGTCCGC 
    GGCGAGATCC CGCGCGCGCA AGCAGGCTTA CACATTGGAA TTGGAAGCTG 
    AAGTTCAGAA ACTCAAGGAG ATGAACAAGG AATTGGAGAG GAAACAGGCA 
    GATATCATGG AAATGCAGAA AAATGAGGTA GAAGAAATGA TAAAGGATCC 
    ATTTGGAAGA AGGAAGAGAC TTTGCTTGCG AAGAACACTG ACTGGTCCCT 
    GGTGATGACG AGTGGTCGAT GGCATGCAAA TTCCCACCTT CATCAGCGAC 
    TGTGCATAAT TTAATCTGTT GTAAACCAAT GGTGGACGAA CTTGTGCTTG 
    ATTAATCTTC TAGTTTCATT TTTCCTGCTA GCTGATTCTG AGAAGGCTTC 
    CAAAACTGAC ATGTAGATTA TGTGTAGACG AATGAAGCTG TCAGAACAAC 
    TTCCTGTAAT CCTTGAGAAA ACTTGTATAG TGTTGTCTAG GTTTGTATCA 
    TGCTAGTCTT TCTATCTAGT GTCCCACCCT AGAGACCAGA CATCTTGGAT 
    GAGTTCAGAG GTCGATTTAA GCAAGTCATG GGGACCAAGA ATCATACTGC 
    AACCTGCCTG ATGACTAGCT AAGCTAGGTA GTATGTAGCA ATATCTGATA 
    TCTGTACCTG CTTCCTGAAG TATGTATTGT TATCTAGTGT ATCTGATATC 
    TAGCGTGTAA ACTGTAAAGG AGTATAAGCA GACCTAGTTC TCAAGAAAAA 
    AAAGTATAAG CAGACCTACT AATTGCTTAT AAGCCTGTTA CTT

    Gene models with high sequence identity

    1. AT3G19290.3 [+] show detail - ABRE binding factor 4
      E-value: 5e-30; Score: 129.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 10.657
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0
    HMMSmart Basic-leucine zipper (bZIP) transcription factor 3.7e-11
    Coil coiled-coil 0
    HMMPanther CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF 8.2e-08
    HMMPanther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 8.2e-08
    HMMPfam bZIP transcription factor, bZIP-1 1.8e-11

    See the detailed result >

    AT3G19290.3

    Model type
    Protein coding
    Short Description
    ABRE binding factor 4
    Curator Summary
    bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses.
    Computational Description
    ABRE binding factor 4 (ABF4); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: abscisic acid responsive element-binding factor 1 (TAIR:AT1G49720.1).
    Link
    InterPro Scan - TAIR