K22417

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22417

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22417

Determination of introduced cDNA(s)

  • J013152E08 - Rice Full-length cDNAs - Original: J013152E08

    full reading [+] show sequence

    Nucleotide sequence: J013152E08 - full reading 
    GGGTTGCAGA GTAGTCAGGC ATCTTGTGCA GCCTCCTGAG GATGCTCTCG 
    GCCGCCTGCT TGGCGTTCGC GTCGCCGCGG TGGAATGCGC TCACCAGCGC 
    CGTGGGCAGC ATCCTGTCGC CGGTCACCTC CCTCACGCAC ACGTCGTCCC 
    CGTGCACCAG CAGCTTCTCC ACCACGGAGA AACACCTGTG CCACAGGCTG 
    TTCCCCCTGT GCTGCCTCAG CGCCGCGAGC ACGCGCCTCG CCGCGCCCTG 
    TCCGGCGAGG GCGACCACGG CCTTCTCGAC GTCCACCCTG TCGTCGACGA 
    GCGTGCACAG CGCTCCCAGC GCCGCGTCCA CGACACGGGC GTCGTCGTTC 
    TCCAGGCAGG CGAGGAGGCC CTCGACGGCG CCGGCCTCGA GGAGGCAGAA 
    TGTCGTCGCC GGCGTGCACA CGCCACGGTG CACCGGGCAG ACGTTCAGCG 
    GTGGGTTCTT GCTGCTGCTA TGGTTATGCA CCCTTGCGTC TTTCAGGCGC 
    TTGAGTATGG TCATCTTCTT TGGCCGCGGC TCGTCCTCCG GCGGCGGCGG 
    AGGCCGGGAC AGCTTGATGG AATGGTAGCT GAGGTTCTCG AGCCCCACGG 
    CGGCGAGCCG TTGCACCTCG CCGCTACCGG CTGCTCCGGC GAGGAGGGCG 
    GTGAGCACCG AGGCGAAGTC GTGGTCCATG GCCGCCTTGA GCACGTCCGG 
    GTTGTACAGC GTCGCGGTGA GCCGCACGAG CGTGCCCACG AGGCCCTCCA 
    TGTACGGCGC GGCGTGCCTG CTCGTCGTCA TCCTCGCCGC GCCGCTCCCC 
    ATCTCCTCGA TCCCGCGCAG TATCGCCGGC ACGGCGCCCT CCTGCACGAG 
    GGCCAGGTTG AGCGAGACGT TCCGGTACGG TAGCCTCGAC AGGAGCGTCA 
    CCGCGGCGGC GTGCCGCTCG GTGATGGCGG CGCGGCCGGC GCGGAAGATG 
    CTCCTGACCA GCCTCCTCGG CTGGCCCTGC GTCTTGCAGA GCCTCTCGGC 
    GATGGTGTGC CCCATGTGCG CGGACAGGGT GATGAGCAGC CTCGTCGAGG 
    CGACGCCGAG CGCCTCCGTC CAGGAGCTCA TGAGCTCCAC GATGGAGTGG 
    CCCCGGTGGT TCTCCCTGAC GACCGAGACC ACGGCGGCGA GCGCCTTGGC 
    GTGCGCGGTG AGCGCGAGCA GGACACGGAT GATGCTGAGG TTGAGCTCGT 
    CGGGCATGAA GCACTTGAGC ATGTGGACGA AGTTGTAGAT GGAGTACTTG 
    GACGTGAGGA CGTGGCCTTC CTTGTTCACC ACGGTGTTGT CCGGATCAAT 
    GCCGGACTCG ACGACGTTGG CGAGGACGGC GGCGGCCATG GCCTTGTAGC 
    TGAGCGGCTC GTCGTCTACC TTTCGGATGA AGAGCTCCTC CACCATGACC 
    GGGACGACGC CTGCCTCGAC GAGCGTCTTG CTGTTGGGGC GGTGAGAGGA 
    AAGCTGGACA AGGACGTCGA GCGCGGCCTT ACGCGCCACG GTGTTGCAGC 
    TGTGCACCAT CTTGATGAGG ACCCCCGACG TGCTTCCGTT GATGTCAATG 
    GTGAGCTCCT GCTCTTGGAT TAGCTCGGCT AGGTAGCCGA CCATCTCCAT 
    TTGCATCTCT TCTGAACCTG TTTAGAATTC CACATCTCAG CTCAAATTTC 
    AATTAACTTA TGAGAAGAAA AGATTCTTAA CTTTGAAGTT ATTTAGCTCT 
    TATGTTAAAA GAAACATTTG GGGCGTTCAA GTGATGAAAG TTGTGAGG

    Gene models with high sequence identity

    1. AT1G68940.1 [+] show detail - Armadillo/beta-catenin-like repeat family protein
      E-value: 3e-102; Score: 369.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Armadillo 84
    HMMSmart Armadillo 48
    HMMSmart Armadillo 4.4
    superfamily Armadillo-type fold 1.1e-19

    See the detailed result >

    AT1G68940.1

    Model type
    Protein coding
    Short Description
    Armadillo/beta-catenin-like repeat family protein
    Computational Description
    Armadillo/beta-catenin-like repeat family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: senescence-associated E3 ubiquitin ligase 1 (TAIR:AT1G20780.1); Has 1977 Blast hits to 1849 proteins in 171 species: Archae - 0; Bacteria - 125; Metazoa - 104; Fungi - 38; Plants - 1549; Viruses - 3; Other Eukaryotes - 158 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR