K22421

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22421

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22421

Determination of introduced cDNA(s)

J013075L23 - Rice Full-length cDNAs - Original: J013075L23

full reading [+] show sequence

GTTTCTGAGC TCGCAGTTCT ACTAGTTTAG TTTTTGCGAA GTGTTCTTCT 
CCAAATCACC TGAGAAATAG GTGTCGATTT TCAGAACTAG CGTGCTAGCC 
ACTAGTGTGG CCATGGAAGT GGTTTCTTCC AGCCACTCCT GCTTGGCATT 
TAACCGAACA CCTAGCAGTG CTTGGAGGTT TCCGGGGAAT GGTCTTGGTC 
CAGGGCATGC AAAGCTCACT CGGCCAAGAA GTGCAATTCT TTGTGTGCGG 
TCAGGGACAG CTTCGAATCC TGCTGATTCT GGGAAAGTTC ATGCGAGCCA 
TGGGTTCTAT GTAAGTGATG TCGATGCAGC TCTCCAAGGG ATCCCGAAGA 
AAGTCGGTGA GATCGAGAAG ATGATCATTC CGAGCTTGCC AGAAGGACCT 
GAAAGCTCTC TAATTAGTAC TGGTTTCTGG GAATGGAAGC CGAAGCTGAG 
TGTATATTAT GAAAAGTCTG GCATAGACAA TAGCAAGGCA CCGTCTGTGC 
TCTTTCTACC AGGTTTTGGA GTGGGAACGT TCCATTTTGA GAAGCAATTG 
AAGGATCTTG GCCGTGATTA CAAAGTATGG ACAATGGATT TTCTAGGGCA 
GGGCATGTCG TTGCCATGTG AAGATCCTGC TCCTAAGAGC ACATCAGGAG 
AGCTAGATGA GGACACATAT TGGGGTTTTG GACAAGAATT ACAACCATGG 
GCGGAGGAGT TGGTGTATTC GATAGATTTG TGGCGTGACC AAGTTCAGCA 
TTTTATTGAA GAGGTTATTG GTGAACCAGT ATATATTGTG GGGAACTCTC 
TGGGAGGTTT TGTTTCTCTA TATCTTGCTG CATCCTGTCC ACACCTTGTA 
AAGGGTGTCA CATTACTTAA TGCAACCCCA TTTTGGGGAT TCCTTCCCAA 
CCCTGCTACA TCTCCTCGCT TGTCGAAGAT TTTTCCATGG GCTGGGACAT 
TTCCACTTCC ATCGTTTGTG AGGAAACTTA CTGAAACAGT GTGGCAGAAA 
ATAAGTGATC CAAGAAGTAT ACAGGGCATA CTCAAGCAAG TATATGCTGA 
CCACTCAACG AATGTGGACA TGGTGTTCTC GCGTATTATA GAGACAACAC 
AACATCCAGC AGCTGCTGCA TCATTTGCAT CCATTATGTG TGCTCCAAAG 
GGACAAATAT CCTTCGAAGA AGCTCTATCT AGGTGCCAAA GGCAGGGTAT 
TCCCATATCT CTTATGTATG GGAGAGAAGA TCCTTGGGTT AGACCTATTT 
GGGGTATTAA AGTGAAACAG CAGGTGCCAG AATCACCGTA TTACGAAATC 
AGTCCTGCTG GTCACTGCCC TCATGATGAG GTTCCTGAGG TTATAAACTA 
CTTACTCAGA GGATGGCTAA AGAATGTCGA ATCTGAGGGT TCAGTTGCAG 
TTCCATTTCT TGAAGAACCC AGCTATGCTG AAAATGGTGT ATCAAGGGAG 
CTGGAATTTG TTAGGGGAGG ATCAAAAAAA TCTGTCCATG TGCGACTCTT 
TGGTTCTAAA ATTTCCTTAT GGAGCCAACT TCGTTCGCTT TTGAAGTCCA 
ACACATGGGT AATATCTAGA TAAGATAGAT TGTCCATACA AGTATGATGT 
TAGAAGCTTC AGTCAAATAT TGTATTCATT ATTCTTTATT TAAAGTAGTC 
AGTTTGATGT CTAGAACTCT AGATATACCC AGTAGACAGG ATTTTGAACA 
TTTCTAGTGG ATGTAAAAAT AGCAAGCTTC AAAATTCTTG TGCCAGAACA 
AAGGGAGTAG CCAAGTTTAG TCCTTGTTTG TATAGGCTAT CAATCTTTAT 
CAAGTTCAAA TTGTGATTTC TGTATAAGCA GAAAAATTGG TATCATATGC 
CATTGTTATA GGATCCACAC TTCACTGTCC TTAGAACTTT CAGTTCTATA 
TCAACTCAGG TGCTTTTTTT CAAAAAGGTA GAATGGACCA TGTGGAATTG 
TGGATTATGT TGCGGCTTAA TGGATAACTC GTCATTTTGA CAGGTTTAAG 
TTATGTTAGA TTGTTAGGTG CAATTTTGTC GGAATTGTAG ATCCGCCATT 
GTGTTAATAT GTGAAAGAAA CAGCGAAAGT GG

Gene models with high sequence identity

AT5G13800.2 [+] show detail - pheophytinase
E-value: 4e-155; Score: 545.00

InterPro Scan Digest

Program	Description	E-value
superfamily	alpha/beta-Hydrolases	3.4e-44
HMMPanther	ALPHA/BETA HYDROLASE	1.4e-62
HMMPanther	ALPHA/BETA HYDROLASE RELATED	1.4e-62
HMMPfam	Alpha/beta hydrolase fold-1	3.4e-08
Gene3D	no description	5.5e-38

See the detailed result >

AT5G13800.2

Model type: Protein coding
Short Description: pheophytinase
Curator Summary: Encodes a pheophytinase that is involved in chlorophyll breakdown.
Computational Description: pheophytinase (PPH); FUNCTIONS IN: hydrolase activity, pheophytinase activity; INVOLVED IN: chlorophyll catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G36530.2); Has 3014 Blast hits to 3012 proteins in 698 species: Archae - 17; Bacteria - 1970; Metazoa - 110; Fungi - 4; Plants - 264; Viruses - 0; Other Eukaryotes - 649 (source: NCBI BLink).
Link: InterPro Scan - TAIR