K22428

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22428

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K22428

Determination of introduced cDNA(s)

  • J023004C23 - Rice Full-length cDNAs - Original: J023004C23

    full reading [+] show sequence

    Nucleotide sequence: J023004C23 - full reading 
    GATCTGTAGT AGCAAACATC TCCTTCGTCT TCCCTACGCG TCCACCCGAA 
    AAAAAAAAAA AAAAGAACAG GAGAATTATC CCCACTTCCA GAGTCCAAAC 
    CTCCCCGTCC ATGGCGACGG CGAGCTCGAT CCGGCCGCCA CGCGCGGCGC 
    TAGTCCTCCT CCTGCTCGCG CTGTCCTTCT CCCTCACCCT CGCCGCCCAC 
    TTCGAGGGCT TTGGCTCCGA CGACCTCCAC TCCGCCCACG CCGACGCGGC 
    CTCGGCAGAC GACGAAGACG ACGAGGGGCT CGACGTCGAG CTCCCGCCGC 
    CGCCGCGCAT CTCCCTCTCC ACTTCAACTC CTTCCCCTCC CGTCACCACC 
    ACCACCACCA CCACCTCCGC TCCAAACCCT AACCCCGATC CCAACCCGAC 
    GCTGACCCCG CCGAACCCCA CCCCGACGCT CGATCTCTGG GACGAGGACG 
    AGTTCGAGGG CATCCCTGTC CCGGAAGCGG CCTCCTCCGA CGAATCCTCC 
    ACGCCGGCGG AAGCCGCCCC GTCAGATCCC GCGGCCGATG CCGCGGCCGA 
    GGCGGCGCCA GCCCCGCCCC GGCGGCCCGC GGAGCTGCTC CGCGCGTACA 
    CCGTCGAGAT CGCGTGCGTC AGCTTCCTGA TCTGCTTCCT GCTCAACTAC 
    TTCACCGGGA AGCGGCAGAA CGAGGCGATC GCGCTCGCCT GGGCCACCAG 
    GTTCGCCACC AGGGACTCCA TCTTCGACAA GAACTTCAGC CTCCTCGGCA 
    CCGGCGACGG CAAGGACACG CCGCTCCTGA TGAAGGAAGG GCAGGACGTG 
    TTCAAGTTCT ACGCGAGCGG GAGGCGGTAC TGCCAGGGGA TGCTCGCCAC 
    CATGGAGATG CGCGCGCGGC ACGACCTGCT GTCCAAGCTG GTGGAGCTGG 
    TGTTCCCCAG GAAGGACACC ATCACGTTCG AGGTGGTGAT GAACGAGGAA 
    GCCATGGACC ACGTCATGTT GGCCGTGGCG AGGAAGAAGG CGGCCAAGAC 
    GATGCAGAAG GAGGAGAGGG ATCTGCAGAA ATTTGCCGGG GTTCTGACCT 
    CGGCACCCGC CGGGAGGAGA TGGGTTGCGG ATGAGCTTGC GGTAGTGGCC 
    GAGTCAAAGG AGGTTGCTGG GGATATGATT ACTGAAGCCG TGCTGGACCA 
    GGTCCTTGGT GACAAAGCTT TTGAGAAATT TGGGAAATGG TTCATCTCAC 
    TTCATTTTTC AGATCAACTG GCAGGCTCTT ACAAGAAAGT CCTTTCTTTC 
    AAGTTTGTAC TGCCAGATGC AAGCAACATG GCTGAGATGA CAAGATTAGT 
    TGCTCTCGTG CCATACTACA TTGATTTGGT GGGGCGTTAC AAGCTCAGCA 
    ACCATGCTCG TTCCAAAACT GAAGCTGCAA GAACAAAAGC TTCCCAGGAG 
    GCTTTCAGGG AGCAACAGGG TCTAAGGCAG GAAGCCCTTC AAAGGAAGAA 
    GGCTGAGAAG AAAAAACTTA TGGAAGAGGC AGAGGCCAAA TTGAGCGCCG 
    AGGCACTCCG CAAGAAAGAG GAAAAAGAAA GGGCTCGTCA GATGAAGAAG 
    TCCATGCCCA AAGTTAAAAT GCTCCGTTCC TAGTAACATC AAAGATATAT 
    CACAGCACTG GCTTTAGCTA TTCAGTTGCT GATTAGCTTA TTGTTGCCTG 
    CCAGACTCTT TTATGTTCTT CTGGGCCATC AACTTTTCTT TGCCATGGGG 
    GGATACAAGC GAAAGGAAAT AGGTGAAGAT AATCTTTTGC TGT

    Gene models with high sequence identity

    1. AT4G24330.1 [+] show detail - Protein of unknown function (DUF1682)
      E-value: 2e-111; Score: 399.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1682 5.7e-86
    HMMPanther Protein of unknown function DUF1682 7.5e-102
    Coil coiled-coil 0

    See the detailed result >

    AT4G24330.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1682)
    Computational Description
    Protein of unknown function (DUF1682); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1682 (InterPro:IPR012879); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1682) (TAIR:AT5G49945.1); Has 377 Blast hits to 366 proteins in 149 species: Archae - 0; Bacteria - 16; Metazoa - 149; Fungi - 92; Plants - 46; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR