K22704

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22704

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22704

Determination of introduced cDNA(s)

  • J023140O15 - Rice Full-length cDNAs - Original: J023140O15

    full reading [+] show sequence

    Nucleotide sequence: J023140O15 - full reading 
    GGTGTTTGGT AAGCCTCGTC TCGAAATGGC GACTTGCTCC GCTGCTTGCG 
    CTCGCCCAGC CGTCGTCGTC TTCGCGTCGC CGGCCGCCGC GCGGCGGCGC 
    GCCGCCTCCT CCGTCTACCT CCCTGGTCGG CCTCTGCGCG GCGGCGGCGT 
    CGTGCGATGC AGCGCTGGGC CTGTAAGCGG TGGGATGATC TCGAAGAAGG 
    TGGCGGAGCT GTGGGCGGCG GCGAGGAGCG CGTCGCCGGT GGCGGTGATC 
    GCCGCGGTGG CCGGAGCGGC GGTGGTCTAC AAGGTGGGGT CCAGTCTCCT 
    CGCGCCGCCT CCTCCGCCGG CGAGGCCCCG GGAGGAGCCC AGCGAGGAGG 
    CCCCGCCGCC TCCGGAGCCG GTGCAGGTGG GGGAGATCAC GGCGGAGGAG 
    TTGCTGCAGT ACGACGGGTC CGACCCCGGG AAGCCGTTGC TCATGGCGAT 
    CAAGGGGCAG ATCTATGACG TCTCCCAGAG CAGATTGTTC TATGGACCTG 
    GTGGACCATA TGCATTGTTT GCTGGTAAAG ATGCCAGTAG GGCGTTGGCG 
    AAGATGTCCT TTGAGCCACA AGATCTGACT GATGATATAT CTGGCCTAAG 
    TTTACTTGAA CTCAGTGCCC TTCAGGACTG GGAGTACAAG TTCAGCAGCA 
    AGTACGTGAA GGTTGGAACC ATAAAAAAGG TGCTCGTAGA ACAGGGTGGC 
    GATAGCACTG CCGATGCAAT AGAGGAGGCA GCTGTCGATG GTGAAGACAG 
    CATCCTGACT GCTAAGATGT CTAATCAATT ACTATATGAG GAAGAAATGG 
    AAGTCGGTAG TGATGATCCA TGAAGGCTTC AGGAGTTGAA AACTGAATTG 
    CCTTCTAGCA GCTAACTTCA CGCATCAAGA ATTCAAGACA AATAATCGCA 
    GAATGATGTT TCATGAATTC ATGTGTCTAT AGGTGTAGAT TACAAGAAGA 
    TACTGCATTA CTGCTGTCGA TTTCCCTTTG TCAATACTCA AGGATATGTT 
    GCCGTAATGC CATGTTATTA GTTGGCTGTC CTGTTCGTCA ATAATTTCAT 
    ATTTCTACCT GCCC

    Gene models with high sequence identity

    1. AT3G48890.1 [+] show detail - membrane-associated progesterone binding protein 3
      E-value: 2e-44; Score: 176.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome b5 1e-32
    HMMPfam Cytochrome b5 5.9e-16
    Gene3D Cytochrome b5 3.2e-31
    HMMPanther STEROID BINDING PROTEIN 4.3e-72
    HMMPanther MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-REL 4.3e-72

    See the detailed result >

    AT3G48890.1

    Model type
    Protein coding
    Short Description
    membrane-associated progesterone binding protein 3
    Curator Summary
    putative progesterone-binding protein homolog (Atmp2) mRNA,
    Computational Description
    membrane-associated progesterone binding protein 3 (MAPR3); FUNCTIONS IN: heme binding; LOCATED IN: chloroplast thylakoid membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: membrane steroid binding protein 1 (TAIR:AT5G52240.1); Has 1079 Blast hits to 1069 proteins in 199 species: Archae - 0; Bacteria - 2; Metazoa - 428; Fungi - 337; Plants - 203; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR