K22712

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22712

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22712

Determination of introduced cDNA(s)

  • J013147E16 - Rice Full-length cDNAs - Original: J013147E16

    full reading [+] show sequence

    Nucleotide sequence: J013147E16 - full reading 
    GCTAGCCCCC CAAGCAGCCG CACCCTCACT CCCTCCTCTC TCCTCTCCTC 
    CCCCCCACGG CGGCGGCGGC GGCGGCGGCG GCAGGATGGC GGATTCGACG 
    GCGAGGACGG TGAAGGACGT GAACCCTCAT GAGTTCGTCA AGGCCTACTC 
    CGCCCACCTC AAGCGCTCCG GCAAGATGGA GCTCCCTGAG TGGGTTGACA 
    TCGTGAAGAC TGCGAGGTTC AAGGAGCTCC CTCCTTATGA TCCGGACTGG 
    TACTACACGA GGGCTGCCTC GATTGCAAGG AAGATCTACC TGAGGCAGGG 
    TATTGGTGTA GGTGGCTTCC AGAAGATCTA TGGTGGCCGC CAGAGGAATG 
    GCTCACGTCC CCCGCACTTC TGCAAGAGCA GCGGCGCTAT CTCACGCAAC 
    ATCCTTCAGC AGCTGCAGAA GATGGGCATC ATCGATGTCG ACCCCAAGGG 
    CGGAAGACTC ATCACCTCCC AGGGAAGGCG TGATCTGGAC CAAGTGGCCG 
    GAAGAGTTGA TGTTACCATC GCCTGAACAG ATCCATGGAT CTTCAACCCT 
    TACTGCCTCT CATATGTTTG GTGGTTGAGT CGGCTACAGT TTGTTTGCAG 
    TTTTGAATTA GAACATGCCC TATCTTTGGT TGAGTCGGCT ATAGTTTGTT 
    TGCAGTTTTG AATTAGAACA TGCCCTATCT TTGCTGGCTC AGAGAATTGG 
    AAGTTGGATG CATCTAGGTA TGATACTGCA GTATGTGTTT TGTCTTTTCC 
    TGAATGAACT CCTAATGCAC TGTCACTAGT TCCGGACAAA AGAAAATTAA 
    ATTAAGCCCA TGGAATGTCT CTGCTGATGC CAGTATTACT CTAGCGGCAC 
    CGAGTTGTCT ATTTTCTTAT GTTCAGTACA AGTGATTACT TGCCGTGTCA 
    TTTATCAGTT AAGCATCGAG GAGTACTGGT AATTCGT

    Gene models with high sequence identity

    1. AT5G61170.1 [+] show detail - Ribosomal protein S19e family protein
      E-value: 1e-59; Score: 227.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Ribosomal protein S19e 2.4e-86
    HMMPfam Ribosomal protein S19e 2.1e-58
    superfamily "Winged helix" DNA-binding domain 2.6e-07
    BlastProDom Ribosomal protein S19e 2e-68
    PatternScan Ribosomal protein S19e, conserved site 0

    See the detailed result >

    AT5G61170.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S19e family protein
    Computational Description
    Ribosomal protein S19e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S19e, conserved site (InterPro:IPR018277), Ribosomal protein S19e (InterPro:IPR001266); BEST Arabidopsis thaliana protein match is: Ribosomal protein S19e family protein (TAIR:AT5G15520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR