K22721

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22721

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22721

Determination of introduced cDNA(s)

  • J033072A12 - Rice Full-length cDNAs - Original: J033072A12

    full reading [+] show sequence

    Nucleotide sequence: J033072A12 - full reading 
    GAGGGAGAGC GCAGACACAC ACCCCCCATA CTGCCACAAG GGCCGCCGCC 
    GCCGCCGGGA GCGATGGCCG CCGCCACCTC CATCAACGCC GTCCCCTGCT 
    CCGCTGGTCG GCCGAAGCGG AGGAGCCAGC GCCGCGGCGC CTCTACGGTC 
    GCCGTGCGCG CGTCCGGCGA CGCTAGCACC GTGACGCTGC TGGACTACGG 
    CGCGGGCAAC GTGCGCAGCG TGCGCAATGC CATCCGCCAC CTCGGCTTCG 
    GCATCCGCGA CGTGCGCAGC CCGGAGGACA TCCTCGCCGC CGACCGCCTC 
    GTCTTCCCGG GGGTCGGCGC CTTCGGCTCA GCCATGGACG TCCTCACCCG 
    CTCCGGGATG GCCGACGCGC TCCGCGAGTA CATCCGCAGG GACCGCCCCT 
    TCCTCGGCAT CTGCCTCGGC CTCCAGCTTC TCTTCGACTC TAGCGAGGAG 
    AATGGCCCGA TAAGCGGCCT TGGTGTGATA CCTGGAGTTG TCAGGCGATT 
    TGACTCTTCG AAGGGTCTCA TTGTGCCTCA CATTGGCTGG AATGCTTTGG 
    AGATCACCAA AGACACGCAG CTGCTCAAGG GAGCTGAAGG CCACCATGTG 
    TACTTTGTTC ACTCCTATCA TGCTCTGCCT TCAGATGAAA ACAAAGAGTG 
    GATTTCTTCT GTGTGCAACT ATGGCGAGAG TTTCATATCA TCCATCTCAA 
    TGGGCAACAT TCAGGCAGTT CAGTTTCACC CAGAAAAGAG CGGAGCTACT 
    GGGCTTTCAA TTTTGAAAAA TTTTCTCAGT CCAAACACTT CAGGATCAAA 
    GGTCCCATCT CGTAGGAAAG CATCGAACCT TGCAAAGAGA GTCATTGCAT 
    GTCTTGATGT TCGGTCAAAT GATAGTGGGG ATCTTGTGGT AACAAAAGGT 
    GACCAGTATG ATGTAAGAGA CCATAGTAGT AGCAAAGAGG TAAGAAACCT 
    CGGGAAGCCA GTGGATTTAG CAAGCCAGTA CTACATAGAT GGTGCTGATG 
    AGGTTAGCTT CTTGAATATA ACTGGTTTCC GTGACTTTCC GTTGGGAGAT 
    TTGCCAATGC TAGAGGTATT ACGTTGTGCA TCTGAGAAAG TATTTGTGCC 
    ACTTACAGTT GGTGGAGGTA TAAGAGACTT CACAGATGCA AATGGGAGAT 
    ACTACTCAAG TTTGGAAGTA GCGTCAGAGT ACTTCAGGTC TGGTGCTGAC 
    AAGATTTCAA TTGGTAGTGA TGCCGTTTTT GCTGCTGAAG CCTATTTGCA 
    GACTGGTGTA AAGACAGGAA AAAGCAGCTT GGAGCAAATC TCTAGAGTAT 
    ATGGCAACCA GGCAGTTGTT GTAAGTATTG ACCCTCGAAG AGTATATGTC 
    AAGAATCCGG AAGAGGTGCA ATTCAAAACT GTAAAGGTGT CCAATAAAGG 
    TCCATTAGGA GAAGAATATG CATGGTACCA GTGCACAGTA AGTGGTGGGC 
    GTGACAGCCG TCCTATAGGA GCATATGAAC TAGCCAAAGC AGTTGAAGAA 
    TTGGGTGCTG GAGAAATACT TCTTAATTGC ATTGATTGTG ATGGCCAGGG 
    CTGCGGATTT GACATAGATC TGGTAAAAAT GGTGTCAGAT GCTGTGACTA 
    TCCCTGTCAT TGCAAGCAGT GGTGCTGGTA CTGTCGAACA TTTTTCTGAG 
    GTCTTTGAGA AAACAAATGC TTCTGCTGCC CTTGCTGCTG GCATTTTCCA 
    TCGGAAAGAG GTTCCGATTT CAGCAGTGAA AGAGCATCTG GTAGATGCTG 
    GCGTGGAGGT CAGAGTGTAG GATGGAAATC CTTTGATCTA TTGGGAAAAT 
    AAATCAGGGC TTTGTAACAG TTGTGTGTTC TATTTTGGGA ATAAGATGGT 
    AATTCATAGG CCATGGATTG GAAATGCAAT TTCGTAATAA ATTGTTTGAA 
    ATCTTCTGTT TG

    Gene models with high sequence identity

    1. AT4G26900.1 [+] show detail - HIS HF
      E-value: 0; Score: 851.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Glutamine amidotransferase type 1 32.846
    HMMPIR Imidazole glycerol phosphate synthase HisHF 0
    HMMPfam Histidine biosynthesis 2.3e-44
    HMMPfam Glutamine amidotransferase class-I, C-terminal 1.5e-30
    HAMAP Imidazole glycerol phosphate synthase, subunit H 35.432
    Gene3D no description 2.1e-71
    HMMTigr Imidazole glycerol phosphate synthase, subunit H 3.1e-83
    HMMTigr Histidine biosynthesis, HisF 3.6e-143
    superfamily Ribulose-phosphate binding barrel 1.1e-63
    superfamily Class I glutamine amidotransferase-like 1.4e-63
    HMMPanther IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT 1.2e-71
    HMMPanther IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT 1.2e-71

    See the detailed result >

    AT4G26900.1

    Model type
    Protein coding
    Short Description
    HIS HF
    Curator Summary
    encodes a glutamine amidotransferase and cyclase, catalyzes the fifth and sixth steps of the histidine biosynthetic pathway
    Computational Description
    HIS HF (AT-HF); FUNCTIONS IN: imidazoleglycerol-phosphate synthase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Imidazole glycerol phosphate synthase, subunit H (InterPro:IPR010139), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Ribulose-phosphate binding barrel (InterPro:IPR011060), Histidine biosynthesis, HisF (InterPro:IPR004651), Glutamine amidotransferase type 1 (InterPro:IPR017926), Histidine biosynthesis (InterPro:IPR006062), Imidazole glycerol phosphate synthase HisHF (InterPro:IPR014640); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR