K22722

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22722

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22722

Determination of introduced cDNA(s)

  • J033076J18 - Rice Full-length cDNAs - Original: J033076J18

    full reading [+] show sequence

    Nucleotide sequence: J033076J18 - full reading 
    GGCCTCGCTA ACCCATTCCC AAAAGCAAAG CGAACCTAAG CTCGCTTCGT 
    CTCTCTCTCG GATTCGATCA TGGCGCAGAG GGAGAAGAAG GTGGAGGAGC 
    CGACGGAGCT GAGGGCGCCG TAGATGACGC TCTGCGCCAA CAGCTGCGGG 
    TTCCCGGGCA ACCCGGCGAC CAACAACCTC TGCCAGAACT GCTTCTTGGC 
    TGCCTCGGCG TCTTCTTCTT CTTCTTCCGC CGCTGCCTCG CCGTCGACGA 
    CGTCGTTGCC GGTGTTTCCG GTGGTGGAGA AGCCGAGGCA GGCCGTACAG 
    TCGTCGGCGG CGGCGGCGGT GGCGCTGGTG GTTGAGCGGC CGACGGCGGG 
    GCCGGTGGAG TCGTCGTCGA AGGCGTCGAG GTCGTCGTCG GTCAACCGAT 
    GCCACAGCTG CCGGAGGCGG GTGGGCCTGA CCGGGTTCCG GTGCCGCTGC 
    GGCGAGCTCT ACTGCGGCGC GCACCGGTAC TCCGACCGCC ACGACTGCAG 
    CTTCGACTAC AAGTCGGCGG CGAGGGACGC CATCGCCAGG GAGAACCCCG 
    TCGTCCGCGC CGCCAAGATC GTTAGGTTCT AAAAGGATAA TACAAGGGGA 
    AACCAACCTG AATTTTCCTC CTTTTTCTTT CTTTTTTCTT CTTCTTTCCT 
    TTTAAAAATT AAAGTTGAGG GTATTATTTT TTCTTTTCCT GAGAGCTTCT 
    TAAAGGTGAA AGGGGAAAAA AAAGAAAGAA AAAGAAAAGG AGATGAGATG 
    GGTGACTCAA GATGCATCAA GCAAAGGAAG AACAATATGA TGATGATGAT 
    GTTGTTGTTA TAGTGGTGGT TGAGGTTGGA AGTTGGATGG AAAGAGGGAG 
    GAAGGAAGAA GATGGGGTTG TTGTGTTGTC CTCCCACAAA TCTCTATTTA 
    ATTTTAATTC CCTTTTGTAT AAAATTTATT ATTATCTGTG GAGAGCATTA 
    TTATCAGCTT GAGCTAGTGG CATCTTTCTT TTT

    Gene models with high sequence identity

    1. AT3G12630.1 [+] show detail - A20/AN1-like zinc finger family protein
      E-value: 2e-31; Score: 133.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PVPR3 PROTEIN 6.2e-59
    HMMPanther PRK1-ASSOCIATED ZINC FINGER PROTEIN 6.2e-59
    ProfileScan Zinc finger, A20-type 8.802
    ProfileScan Zinc finger, AN1-type 12.275
    Coil coiled-coil 0
    HMMSmart Zinc finger, A20-type 0.0016
    HMMSmart Zinc finger, AN1-type 3.6e-16
    Gene3D Zinc finger, AN1-type 1.1e-25
    HMMPfam Zinc finger, AN1-type 1.7e-11
    HMMPfam Zinc finger, A20-type 9.6e-07

    See the detailed result >

    AT3G12630.1

    Model type
    Protein coding
    Short Description
    A20/AN1-like zinc finger family protein
    Computational Description
    A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1013 Blast hits to 1009 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 428; Fungi - 9; Plants - 446; Viruses - 6; Other Eukaryotes - 124 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR