K22813

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22813

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: K22813

Determination of introduced cDNA(s)

  • J023119K22 - Rice Full-length cDNAs - Original: J023119K22

    full reading [+] show sequence

    Nucleotide sequence: J023119K22 - full reading 
    TGCACACACT ATCACTTGCT AGGACAGGGT CGTACATGCA CACTACCCTC 
    GCCTCCTACG CCCAGGATCT CGCCATGCCT GCCGCCGCAC TCGACCTCCT 
    CCCTGACAAG GCGCACCAGC CGTCCATGGC GCCGTCGCTC CACGCCTGGG 
    ACTCCCCCAA TGGCGCCCCC ACTCCCATGC CCAAGAGGCT GGAAGGGAAG 
    GTGGCCATTG TCACCGGCGG GGCGAGGGGG ATCGGGGAGG CGATCGTGAG 
    GCTGTTCGTG AAGCACGGGG CCAAGGTGGT GATCGCGGAC ATCGACGACG 
    CGGCGGGCGA GGCGCTGGCG GCGGCGCTGG GGCCGCACGT CGGGTTCGTG 
    CGGTGCGACG TGTCGGTGGA GGAGGACGTG GAGCGCGCCG TCGAGCGCGC 
    CGTGGCGCGG TACGGGCGGT TGGACGTGCT GTGCAACAAC GCCGGGGTGC 
    TGGGCCGCCA GACGCGCGCC GCCAAGAGCA TCCTGTCGTT CGACGCCGGG 
    GAGTTCGACC GCGTGCTCCG CGTCAACGCG CTGGGCGCCG CGCTCGGCAT 
    GAAGCACGCG GCGCTCGCCA TGACCCAGCG CCGCGCCGGC AGCATCATCT 
    CCGTCGCCAG CGTCGCCGGC GTGCTCGGCG GCCTCGGCCC GCACGCCTAC 
    ACCGCCTCCA AGCACGCCAT CGTGGGGCTC ACCAAGAACG CCGCCTGCGA 
    GCTCGGCGCC CACGGCATCC GCGTCAACTG CATCTCCCCC TTCGGCGTCG 
    CCACCCCGAT GCTCATCAAC GCCTGGCGCC AGGGCCACGA CGCCTCCACC 
    GCCGACGACG CCGACGCCGA CATCGACCTC GACATCGCCG TGCCCAGCGA 
    CCAGGAGGTG GAGAAGATGG AGGAGGTGGT CAGGGGCCTC GCCACGCTCA 
    AGGGCGCGAC GCTGAGACCC AGGGACATCG CCGAGGCGGC GCTCTTCCTC 
    GCCAGCGACG ACTCCAGATA CATTTCCGGC CACAACCTCG TCGTCGACGG 
    CGGCGTCACC ACCTCCAGAA ACCTAATTGG CCTTTGACTC TTCTTCTCCC 
    TCTAGATGAA TGCGATAGTT TAGAACACAA CTAAAAAGGA TTTGTTAATG 
    TGACGCAACG CAAGTGTACT CAGCTTCATC CCATTTTGTT AATCTCTTGA 
    TTCAATGTGT TAATTGGACT TGTGC

    Gene models with high sequence identity

    1. AT3G51680.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 3e-74; Score: 276.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SHORT CHAIN ALCOHOL DEHYDROGENASE 9.8e-152
    HMMPanther Short-chain dehydrogenase/reductase SDR 9.8e-152
    HMMSmart Polyketide synthase/Fatty acid synthase, KR 0.0082
    HMMPfam Short-chain dehydrogenase/reductase SDR 4.9e-30
    Gene3D NAD(P)-binding domain 3.6e-69
    superfamily NAD(P)-binding domain 4.6e-74
    FPrintScan PRICHEXTENSN 7.2e-10
    FPrintScan PRICHEXTENSN 7.2e-10
    FPrintScan PRICHEXTENSN 7.2e-10
    FPrintScan PRICHEXTENSN 7.2e-10
    FPrintScan Glucose/ribitol dehydrogenase 2e-41
    FPrintScan Glucose/ribitol dehydrogenase 2e-41
    FPrintScan Glucose/ribitol dehydrogenase 2e-41
    FPrintScan Glucose/ribitol dehydrogenase 2e-41
    FPrintScan Glucose/ribitol dehydrogenase 2e-41
    FPrintScan Glucose/ribitol dehydrogenase 2e-41
    FPrintScan Short-chain dehydrogenase/reductase SDR 2.1e-11
    FPrintScan Short-chain dehydrogenase/reductase SDR 2.1e-11
    FPrintScan Short-chain dehydrogenase/reductase SDR 2.1e-11

    See the detailed result >

    AT3G51680.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, root; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26770.1); Has 119773 Blast hits to 119555 proteins in 3701 species: Archae - 1000; Bacteria - 77051; Metazoa - 6334; Fungi - 6742; Plants - 2947; Viruses - 5; Other Eukaryotes - 25694 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR