K22821

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22821

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22821

Determination of introduced cDNA(s)

  • J013074M03 - Rice Full-length cDNAs - Original: J013074M03

    full reading [+] show sequence

    Nucleotide sequence: J013074M03 - full reading 
    GAATCAGGTC TTCGTCTTCT TCTTCCTCAT CCCCGTGCCA ATACCGATTT 
    CGCGAGCTCC GATGGATTCC GCGAGAGAGG AGACGTCGCC ATGAGAGGGG 
    AAGCCGAGCT GTGCGTGTAG CTCGCTGCAA TCGCTGCGCC GGTCAAGAAA 
    CCAGCCGGAA TCGGCGGCTG ATTTCGGTGG AGGAAGATGC GGCGGAAGGC 
    GGCCGGAGAT GCTGCTCTGG TAGGCGGCTG CTTCTTGCTG CTCCTCCACC 
    CTCTCCTCTC CCATGGCGCG GACATGCCGT TGGGCTCCTC CCTCTCGCCG 
    GCGAACCAGG CGTTGTGGTC GTCTCCCAAC AACACCTTCT CCCTCTCCTT 
    CACGGCGTCC CCGACCTCGC CGTCCCTCTT CGTCGCCGCC ATCACCTACG 
    CCGGCGGGGT GCCCGTGTGG ACGGCCGGCA ACGGCGCGAC CGTTGACTCC 
    GGTGGCGCGC TCCGCCTCTC GTCCAGCGGC GACCTCCAGC TCGTCAACGG 
    CTCCGGCGCC GTGGTCTGGT CATCGAACAC CGGCGGGCAG GGGGTCACCA 
    CCGCCGCGCT GCAGGAGAGC GGCAACCTCC TGCTCAGGAA CTCGTCGGCG 
    ACGTTGTGGC AATCGTTCGA ACACCCCACG GACACGGTGG TGATGGGGCA 
    GAACTTCACC TCCGGCATGA ACCTCACCTC GGCGAGCTAC CAATTCTCCC 
    TCGACCGGAA CACCGGCAAC CTCACCCTCA AGTGGACCGG CGGCGGCACG 
    GTCACCTACT TCAACGAGGG GTACAACACC ACCTTCACGG CGAACAAGAC 
    GCTGAGCTCG CCGACGCTGG CGATGCAAAC CAACGGTATC GTCTCCCTCA 
    CCGACGGCTC GCTCACCTCT CCCGTCGTCG TCGCGTACAG CAGCAACTAC 
    GGCGAGAGCG GCGACATGCT GAGGTTCGTG CGCCTAGACA CGGACGGCAA 
    CTTCCGCGCC TACAGCGCGG CGCGCGGCAG CAACGCGCCG ACGGAGCAGT 
    GGTCGGCGGT GGCGGACCAG TGCCAGGTGT TCGGCTACTG CGGCAACATG 
    GGCGTGTGCG GCTACAACGG CACGTCGCCG GTGTGCCGGT GCCCGTCGGA 
    GAACTTCCAG CTGAGCAACC CGGCCGACCC GCGCGGCGGC TGCCGGCGCA 
    AGATCGAGCT CCAGAACTGC CCGGGCAACT CCACCATGCT CCAGCTCGAC 
    AACACGCAGT TCCTGACCTA CCCGCCGGAG ATCACGACGG AGCAGTTCTT 
    CGTCGGCATC ACCGGCTGCC GCCTCAACTG CCTCTCCGGC AGCTCGTGCG 
    TCGCCTCCAC GGCGCTCTCC GACGGCTCGG GCCTCTGCTT CCTCAAGGTG 
    TCCAACTTCG TCAGCGGGTA CCAGTCCGCG GCGCTGCCCA GCACGTCGTT 
    CGTCAAGGTC TGCTTCCCGG GGATCCCCAA CCCGCCCCTC GGCGGCGGCG 
    GGTCGCCGTC GGGCAGGGCG TCGGGCGTCC GCGGGTGGGT GGTCGCGGTG 
    GTGGTGCTCG GCGCGGTGTC CGGGCTGGTG CTGTGCGAGT GGGCGCTGTG 
    GTGGGTGTTC TGCCGGCACA GCCCCAAGTA CGGCGCGGCG TCGGCGCAGT 
    ACGCGCTGCT GGAGTACGCG TCCGGCGCGC CGGTGCAGTT CTCGTACCGG 
    GAGCTGCAGC GATCGACCAA GGGGTTCAAG GAGAAGCTGG GCGCCGGCGG 
    GTTCGGCGCC GTGTACCGCG GCGTGCTGGC GAACCGGACG GTGGTGGCGG 
    TGAAGCAGCT GGAGGGGATC GAGCAGGGGG AGAAGCAGTT CAGGATGGAG 
    GTGGCCACCA TCAGCAGCAC GCACCACCTC AACCTCGTCC GCCTCATCGG 
    CTTCTGCTCC GAGGGGCGCC ACCGCCTGCT CGTCTACGAG TTCATGAAGA 
    ACGGCTCCCT CGACGCCTTC CTCTTCGCCG ACGCGCCGGG CGGCAGGATG 
    CCGTGGCCGA CGCGGTTCGC CGTCGCCGTC GGCACCGCCC GCGGCATCAC 
    CTACCTCCAC GAGGAGTGCC GCGACTGCAT CGTCCACTGC GACATCAAGC 
    CCGAGAACAT CCTCCTCGAC GAGCACCACA ACGCCAAGGT CTCCGACTTC 
    GGCCTCGCCA AGCTCGTCAA CCCCAAGGAT CACCGCCACC GGACGCTCAC 
    CAGCGTGCGC GGGACGAGGG GCTACCTCGC GCCGGAGTGG CTCGCCAACC 
    TCCCCATCAC GGCCAAGTCC GACGTCTACA GCTACGGCAT GGTGCTGCTC 
    GAGCTCGTCA GCGGCCACCG CAACTTCGAC GTGTCGGAGG AGACCGGCCG 
    GAAGAAGTAC TCCGTGTGGG CGTACGAGGA GTACGAGAAG GGGAACATCG 
    CCGCCATTGT CGACAAGAAG CTCCCCGGGG AGGACATCGA CATGGTCCAG 
    GTGGAGCGCG CGCTGCAGGT GAGCTTCTGG TGCATCCAGG AGCAGCCGGC 
    GCAGCGGCCG TCGATGGGGA AGGTGGTGCA GATGCTGGAA GGGATCATGG 
    ATCTCGAGAG GCCGCCGCCG CCCAAGTCGT CGGGCAGCTT CTTGAGCCTG 
    ACGTCGGCGA CCACCGCCAC CGGTGTCAGC GGCAGCGGCA GCACCAGCAT 
    GGTCTCCACG TTTACTTCCT CGGCGGCGCC GCCGGCGCCC ACGCCGTCGC 
    CGAACGTCGA CGAGGTCCAG CAGGAGATGG CCGTGGGACG CTCGGCGTCG 
    GCCAGGATCC GCGACCGGGC GTCTCGTTCG CTGCTGGGGC AGGAGCCATA 
    CATGACAATG TAAAACTTCA TCTTCTCATG AGGTGAATAG CAAAATGATT 
    TTGCTTTTTT TTTTTGCTCC AGTAAATGGG AAAATTGCTC TGGTTAGTGA 
    GCAATTAGGG AGTTGATCTG GTTGATTTTG TTTTGGTGGA ACATAGAAGC 
    AGCTGTCGGT GGAAGAGAAG TGCTTTTCAC TGATGGTGAG CAATTTCGTA 
    CTTCTACTTG AGAGGATATC TATGTGCCTG ATGAGCTGAA TTCTGCAATT 
    TGTAAGTACA GATTAGATCA AACTCAATGG TATATTCGCG TTGTAACTTG 
    T

    Gene models with high sequence identity

    1. AT1G34300.1 [+] show detail - lectin protein kinase family protein
      E-value: 0; Score: 858.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 1.1e-79
    superfamily Curculin-like (mannose-binding) lectin 1.1e-21
    ProfileScan Protein kinase, catalytic domain 37.093
    ProfileScan Curculin-like (mannose-binding) lectin 13.975
    HMMPfam Serine/threonine-protein kinase-like domain 2.4e-49
    HMMPfam Curculin-like (mannose-binding) lectin 6.3e-20
    HMMPfam S-locus glycoprotein 1.3e-07
    HMMPanther S-RECEPTOR KINASE 1.8e-202
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.8e-202
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    Gene3D no description 3.9e-21
    Gene3D no description 2.4e-50
    HMMSmart Curculin-like (mannose-binding) lectin 9.5e-15
    HMMSmart Serine/threonine-protein kinase domain 3.4e-35
    HMMSmart Tyrosine-protein kinase, catalytic domain 5.1e-21

    See the detailed result >

    AT1G34300.1

    Model type
    Protein coding
    Short Description
    lectin protein kinase family protein
    Computational Description
    lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT2G19130.1); Has 120498 Blast hits to 118775 proteins in 4615 species: Archae - 117; Bacteria - 12995; Metazoa - 44949; Fungi - 10067; Plants - 34445; Viruses - 432; Other Eukaryotes - 17493 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR