K22840

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22840

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22840

Determination of introduced cDNA(s)

  • J013045E13 - Rice Full-length cDNAs - Original: J013045E13

    full reading [+] show sequence

    Nucleotide sequence: J013045E13 - full reading 
    GGAGCGCGAC CTCGCCGCGC CGCCCATGGT CCTATCCACG CCGCGTCAGG 
    AGGAAGCAGA GAAGCGTCGG CGAGTAGGTC GTCGGCCGGC CGATGGAGGC 
    AGCGACGATC CCGAGTCGAA GGTGCAGTAG AGATGGCAAC AGGATGAGGC 
    CGAGAGGATG CCGACAGTGA GGTTGACCGG TAGGGGGAGT CAAGATTGTC 
    AGGGGAAGCA ATAGCGGTGG CCTTGGGCCT TGGATCCCGG TGGCGAGGTC 
    GCGCTCGGCC ATCGAGCCCA CCCCCATGGC GCCCCGGCCA TCGATGGCCG 
    GCTCCGAGTT CTCCTACGCG TTCGCAATCG TCGCCGATCC AATCTGTACT 
    CTGATGAGAG AAGGGGATAG CGTTGGCACC TTGGCAGCAG CAAAGGAGAG 
    GCGCAGTCAA AGAGAGTCAC GCACGCAGTT AGGGGAAGCA GGCAAGGCGA 
    GTTGGGAGAA GGAGAGGAGG AGGAGCGAGC AATGGCGGCA GCAGCAGCAG 
    CTTTGCCCAC CGCTGCCGCT TTTCCCCACC TCTCCTCCGA TTAATCCCCT 
    CCTCCCATTT CTCCGCCTCC CCTACCTACT CGCGCCGCCG CCGCCGCCGC 
    CGTCGCATTG GGCGGCAAAC GGCCTGATGG AGCAGTACGA GGAGGAGAAG 
    ATTGGAGAGG GCACGTACGG GGTAGTGTAC AAGGCGCGGG ACAAGGTCAC 
    CAACGAGACG ATCGCGCTCA AGAAGATCCG GCTTGAGCAG GAGGATGAGG 
    GTGTCCCCTC CACCGCCATC CGCGAGATCT CGCTCCTCAA GGAGATGCAT 
    CACCGCAACA TCGTCAGGTT ACACGATGTT ATCCACAGTG AGAAGCGCAT 
    AGGTCTTGTC TTTGAGTATC TGGATCTGGA CCTGAAGAAG TTCATGGACT 
    CTTGTCCAGA GTTTGCAAAA AACCCCACTT TAATTAAGAC TTTGGTTTAG 
    CCAGGGCATT TGGAATTCCT GTCCGCACAT TTACTCATGA GGTTGTAACC 
    TTGTGGTATA GAGCTCCAGA GATCCTTCTT GGATCAAGGC AGTATTCTAC 
    ACCAGTTGAT ATGTGGTCAG TTGGTTGTAT CTTTGCAGAA ATGGTGAACC 
    AGAAACCACT GTTCCCTGGT GATTCTGAGA TTGATGAATT ATTTAAGATA 
    TTCAGGGTAC TAGGAACTCC AAATGAACAA AGTTGGCCAG GAGTTAGCTC 
    ATTACCTGAC TACAAGTCTG CTTTCCCCAA GTGGCAGGCA CAGGCTCTTG 
    CAACTATTGT CCCTACTCTT GACCCTGCTG GTTTGGACCT TCTCTCTAAA 
    ATGCTTCGGT ACGAGCCAAA CAAAAGGATC ACAGCTAGAC AGGCTCTTGA 
    GCATGAGTAC TTCAAGGACC TTGAGATGGT ACAATGACCC TGCTATGGCT 
    TTACATTGAA TTGGCTTATG TATGGGCTGG GCTGCTCATT TCATTCCTTG 
    TGTGAACGCT GTGCCCTTCG TTTGGGCATT TTTGTCATTC AGCTGGATAT 
    ATTTCAAATC TTGTGTGTTT GATATGTATA TTCAGGAACG CTAAATAGAT 
    CACCGTCTTG GCCTCG

    Gene models with high sequence identity

    1. AT3G48750.1 [+] show detail - cell division control 2
      E-value: 4e-111; Score: 172.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR11295:SF109 1.49999648196318e-63
    Gene3D G3DSA:1.10.510.10 5.59999989416987e-42
    superfamily Protein kinase-like domain 8.30001403791594e-38
    HMMPanther PTHR11295 1.49999648196318e-63
    HMMPfam Serine/threonine-protein kinase-like domain 1.6e-28
    ProfileScan Protein kinase, catalytic domain 0
    Gene3D no description 9.8e-26
    superfamily Protein kinase-like domain 1.5e-24
    HMMPfam Serine/threonine-protein kinase-like domain 2.7e-19
    ProfileScan Protein kinase, catalytic domain 15.072
    HMMSmart Serine/threonine-protein kinase domain 0.001
    PatternScan Protein kinase, ATP binding site 0
    HMMPanther CELL DIVISION CONTROL PROTEIN 2 (P34 PROTEIN 1e-60
    HMMPanther CDC2, MAP KINASE-RELATED 1e-60

    See the detailed result >

    AT3G48750.1

    Model type
    Protein coding
    Short Description
    cell division control 2
    Curator Summary
    A-type cyclin-dependent kinase. Together with its specific inhibitor, the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype has reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Phosphorylation of threonine 161 is required for activation of its associated kinase.
    Computational Description
    cell division control 2 (CDC2); FUNCTIONS IN: protein binding, protein kinase activity, cyclin-dependent protein kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B1;2 (TAIR:AT2G38620.2); Has 126125 Blast hits to 124135 proteins in 4221 species: Archae - 112; Bacteria - 14002; Metazoa - 46757; Fungi - 13170; Plants - 30525; Viruses - 484; Other Eukaryotes - 21075 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR