K22938

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22938

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22938

Determination of introduced cDNA(s)

  • J023106E24 - Rice Full-length cDNAs - Original: J023106E24

    full reading [+] show sequence

    Nucleotide sequence: J023106E24 - full reading 
    GCCTCTTGAC CCCATTTCGG TGCTTAACCA AACTCACCAT AATATCAGTT 
    CATCCACAAC AATGTCGGCC TACTGCGGCA AGTACAAAGA TGAGCTCATA 
    AAGAATGCTG CCTACATTGG CACCCCGGGC AAGGGTATCC TCGCTGCGGA 
    CGAGTCCACT GGCACCATCG GCAAGCGCTT CGCCAGCATC AATGTTGAGA 
    ACGTCGAGGA TAACCGCCGT GCCTTCCGCG AGCTCCTCTT CTGCACCCCT 
    GGCGCCCTCC AGTACATCAG CGGCGTGATC CTCTTCGACG AGACCCTCTA 
    CCAGAAGACC AAGGATGGCA AGCCCTTCGT CGATGTCCTC AAGGAGGCCG 
    GTGCCCTCCC CGGCATCAAG GTGGACAAGG GCACCATCGA GGTCGCCGGC 
    ACCGACAAGG AGACCACCAC CCAGGGCCAC GATGACCTCG GCAAGCAATG 
    CGCCAAGTAC TACGAGGCCG GTGCCCGCTT CGCCAAGTGG CGTGCCGTCC 
    TCAAGATCGG ACCCAACCAG CCCTCCCAGC TTGCCATTGA TCTGAACGCC 
    CAGGGCCTTG CTTGCTACGC CATCATCTGC CAGGAGAACG GGCTGGTGCC 
    GATCGTCGAG CCGGAGATCC TCGTCGATGG CCCTCACGAC ATCGATCGAT 
    GCGCGTACGT CTCCGAGGTG GTCCTCGCCG CGTGCTACAA GGCGCTGAAC 
    GAGCACCATG TCCTCCTCGA GGGCACCCTC CTGAAGCCCA ACATGGTCAC 
    CCCGGGTTCC GACGCCAAGA AGGTGGCGCC GGAGGTCATC GCGGAGTACA 
    CCGTCCGCAC CCTCCAGAGG ACCGTCCCTC CTGCTGTGCC GGCCATCGTC 
    TTCCTCTCCG GTGGACAGAG CGAGGAGGAG GCGACGCTGA ACCTGAACGC 
    CATGAACAAG CTCAGCGCCA AGAAGCCGTG GTCGCTGTCC TTCTCCTTTG 
    GCCGTGCCCT GCAGCAGAGC ACGCTCAAGG CCTGGGCTGG CAAGACGGAG 
    AACGTAGAGA AGGCCAGGGC GGCCTTCCTC GTCAGGTGCA AGGCCAACTC 
    CGAGGCTACC CTGGGTACTT ACAAGGGTGA TGCTGTCCTC GGCGAGGGCG 
    CTGCTGAAAG CCTGCACGTC AAGGACTACA AGTACTGATC TGCATCAGGC 
    GCTGGCCTGC TATGGCTTGG CTACCTGATC GATTTCCCAT TCTGGGGCCG 
    TTACATAATG CGGTTTTGAT ATCTAGAGGC TCTAACAGGA TTCACAATTT 
    CGGATCGGAA TTTCAGAATT TTTCCCTTTC CGATAGATCG AACCCTGGAG 
    CACAATATAT CTGTGGTTAT CTAAAAGCCT TGTCTTAATA ATCCAGAACC 
    TTTTTTTTTC TTGTAAAATA TTTGCTGATG AACATCAGCT GGCCCGGAGT 
    TTTTATTTTT ATCAATCACT TTGTAACTGT CTGATTTGCC CGGTGCTGTG 
    TGATTTTGTT GAATGAAATT

    Gene models with high sequence identity

    1. AT2G36460.1 [+] show detail - Aldolase superfamily protein
      E-value: 2e-167; Score: 585.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Fructose-bisphosphate aldolase, class-I 0
    HMMPfam Fructose-bisphosphate aldolase, class-I 4.1e-168
    superfamily Aldolase 6.9e-159
    Gene3D Aldolase-type TIM barrel 1.8e-145
    HMMPanther Fructose-bisphosphate aldolase, class-I 2.3e-269

    See the detailed result >

    AT2G36460.1

    Model type
    Protein coding
    Short Description
    Aldolase superfamily protein
    Computational Description
    Aldolase superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cadmium ion, response to salt stress, pentose-phosphate shunt; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT3G52930.1); Has 5036 Blast hits to 5030 proteins in 977 species: Archae - 0; Bacteria - 714; Metazoa - 1434; Fungi - 8; Plants - 477; Viruses - 0; Other Eukaryotes - 2403 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR