K23011

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23011

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23011

Determination of introduced cDNA(s)

  • J013107G14 - Rice Full-length cDNAs - Original: J013107G14

    full reading [+] show sequence

    Nucleotide sequence: J013107G14 - full reading 
    GACGAATCAT TTCCTATCCA TCTCCTCCGC CCTCCTTTCT TCTCCGGCCG 
    CGCGCCGCAC GGCCCACCTG CAGCCACCCA GCAAAGCCGC CGCGCGCGTC 
    CTTCTCGCTC TAGGGTTTTC CCACACGACA ACCCCCCAAG CATGTCGGCG 
    CCGCCGTTGC TGAAGGCTCC GGCCGCCGCC GCCGCCTCCC TCGTCGCGGC 
    GGCCGCGGCC CACCGCGCTA CGGCCGCCGC CGCCGCCCCG TCCGGTGCGT 
    CCCGCGTCCC GCCGCGACGC TTGCGCTGCT CTGCATCAGG CGCCGCCGCC 
    GTCGAGGTGC GTGCTCCGAT GGATTGGGCG ACGAGGTCGC TGGAGGAGAT 
    GCAGCGGGCA GAGGACTTCG ACTCTTTCTG CCTGATGGGG CTTTCGCCGC 
    TGGATGGGCG GTACGAGCGC TTTACCAGGG ACCTGAAACC CTTCTTCAGT 
    GAGTTCGGCC TCATCAGATA CCGGGTCATC GTTGAGGTAA AGTGGCTACT 
    GAAACTCTCC CAAATCCCTG AGATCAATGA GGTGCCTCCA TTCAGCAAGG 
    AGGCCCAGTT ATTCCTGGAT GCGATTATCC AGGATTTCAG TGTTGCTGAT 
    GCAAAAGAAG TGAAAAAGAT TGAGAAAACA ACCAACCATG ATGTGAAGGC 
    TGTTGAGTAC TTTCTCAAGC AAAAATGCAG CTCAAATCCA GAGATTGCAA 
    AGGTGTTGGA GTTCTTCCAT TTTGGATGTA CTTCTGAAGA TATCAACAAC 
    TTGTCACATG CATTAGCTCT AAAAGAGGGG GTAAATACAG TTATGTTCCC 
    TGTTATGATG GACATATGCA AAGCAATGTG CTCCTTGGCA ACACAAAATT 
    CAACCATCCC TATGCTGTCG CGAACTCATG GACAGCCAGC ATCGCCAACA 
    ACTCTGGGAA AAGAGATGGC GAATTTTGCG GCCAGATTGT CAAGCATAGG 
    AAATAGTTTT TCTGAGGTCA AGATACTAGG GAAATTCGCT GGAGCTGTCG 
    GAAATTACAA CGCTGATGTT GTTGCATATC CAGAAGTTGA CTGGCCTAAG 
    GTTGCAGAAG ATTTTGTCAA ATCGTTGGGC TTGGAGTTCA ATCCTTATGT 
    TACCCAGATT GAGCCACATG ACTATATCTC GAAGCTCTTC AATCTATTTG 
    TTCAGTTTAA CAATGTCTTG ACTGATTTCG ATAGAGACAT GTGGACCTAT 
    ATATCACTAG GCTACTTCAA GCAGATAGTA AAGGCTGGTG AAGTTGGATC 
    TTCCACAATG CCTCACAAAG TCAATCCCAT TGATTTCGAA AATAGTGACG 
    GCAATTTGAC TATAGCCAAT GGTACATTGT CTTCTTTAAG CATGAAGCTA 
    CCAATTTCTC GGATGCAGCG TGATCTCACA GACTCGACTG TTTTGAGAAA 
    TTTGGGTGTT GGATTAGGGC ATTCACTCTT GGCTTACAAA GCTACATTGC 
    GAGGAATCAA TAAGGTTCAG GTGAATGAAT CCCGGTTATC TGAAGACTTG 
    GATCAAACAT GGGAGGTCCT TGCAGAGCCA ATACAGACAG TGATGCGAAG 
    GTATGGAATC CCTGAACCTT ATGAGAAGCT GAAGGAAATG ACCAGAGGGC 
    AGGCTGTCAC CAAGGACAGC ATACGGCAAT TCATTGAAGA TCTAGACTTG 
    CCAGAGGCGG CACGATCGTC GCTTCTGAAG CTAACACCAC ATTCTTATAT 
    CGGAGAGGCA GAATTTTTGG CTAGAAATAT CGAAGAGGTG GTTGATCTAA 
    AATCTGGATT TAAGATCGAG TGAGCACCCG TTCCGGAACT CGGTAATCCC 
    CCCAAATTTT TTACCAGGAC AGGAAGAATA ACGGGCGAAA ATCTTCAAAG 
    CTGAGGGTGA ACACCGAATT GTGTCCTGAC CTTTAACAAC TTCCGGTTAC 
    GCTAATTCAG CTGTGCTGAT TGAAAGGCTT TTGGATGCAC GCAAAATGCA 
    TCCGTGGAAT TTGTGCCATG CGTGTTTCGG AATAAAATCA GAAGCAGGAT 
    AAATCTTGCT CGCCTGTCTT TTTCAATCGC AAGTGGCCTT GCTACAGTCT 
    TCATTAATGC AGCATTCGCC TTTGCATCGA GCAGGCTACG

    Gene models with high sequence identity

    1. AT1G36280.1 [+] show detail - L-Aspartase-like family protein
      E-value: 0; Score: 650.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.9e-78
    superfamily L-Aspartase-like 8e-100
    HMMPanther ADENYLOSUCCINATE LYASE 1.4e-142
    HMMPanther ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUC 1.4e-142
    FPrintScan Fumarate lyase 1.6e-12
    FPrintScan Fumarate lyase 1.6e-12
    FPrintScan Fumarate lyase 1.6e-12
    HMMPfam Adenylosuccinate lyase C-terminal 5e-53
    HMMPfam Fumarate lyase 3.8e-48
    PatternScan Fumarate lyase, conserved site 0
    HMMTigr Adenylosuccinate lyase 2.4e-135

    See the detailed result >

    AT1G36280.1

    Model type
    Protein coding
    Short Description
    L-Aspartase-like family protein
    Computational Description
    L-Aspartase-like family protein; FUNCTIONS IN: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity; INVOLVED IN: purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Adenylosuccinate lyase C-terminal/plant (InterPro:IPR013539), L-Aspartase-like (InterPro:IPR008948), Adenylosuccinate lyase (InterPro:IPR004769), Fumarate lyase, conserved site (InterPro:IPR020557), Lyase 1, N-terminal (InterPro:IPR022761), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: L-Aspartase-like family protein (TAIR:AT4G18440.1); Has 11787 Blast hits to 11785 proteins in 2616 species: Archae - 258; Bacteria - 6912; Metazoa - 254; Fungi - 311; Plants - 90; Viruses - 0; Other Eukaryotes - 3962 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR