K23013

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23013

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23013

Determination of introduced cDNA(s)

  • J013147J04 - Rice Full-length cDNAs - Original: J013147J04

    full reading [+] show sequence

    Nucleotide sequence: J013147J04 - full reading 
    GGTAGTGTTC GCACGGTGGA ATCAAGAGAA GATGCAAGCG CAGGACGTGA 
    AGAACGTCTT CTGCATGAAG GGTGGGCAAG GGGAGTCCAG TTACCTCAAA 
    AACAGTAAAG CTCAGTGCAG TTGAGAGACC TGCAAATGAT GCTGTATGCC 
    CTGGAGGAGA CACTGGACAA GATCGCGATC CCTCCCCGCG GGCCGGGGAG 
    GCTTCTGCTG ACGGCGGCCG ACCTCGGCTG CTCCTGTGGC CGCAGCTCGC 
    TCGTCGTCGC CGATGCGATC GTGCAGCACA TGACCAAGCT GTGTCGCGGT 
    CGCGGCAAGC ATGTCGACGC CGTCGCGGCT GCTGATCCGG AGTTCTGGTT 
    CTACTTCTCC GACCTCCCGA GCAACGACTT CAACACCCTC TTCAGCCTCC 
    TCCCGCCGCA CGCCGCTTCC TCCGGCGACG GCAGTGGGCG GCGCTACTTC 
    GCCGCCGCCG TGCCTGGCTC GTTCCATGAC CGTCTGTTCC CGGAGCGATC 
    TATCGACGTG TTCACCTCCA CCTTCTGTCT GCACTGGCTC TCTCAGGTGC 
    CGGACGAAGT CGCTGATACG CGGTCACCGG CTTACAACAA GGGGAAGGTG 
    TTCGTGCAGG GCAGCTCGGA GGAGACCGGC ACGGCGTACC GGCGGCAGTT 
    CCAGTCCGAC ATGGCGCGCT TCCTGCGCTG CCGCGCCGCC GAGCTGAAAC 
    CTGGTGGCGC CATGTTCCTA GTCTTCGTTG GCCGCCCGTC GTCCGCCGGC 
    CCCACCGACC AAGGCCGCAG CCTCAACCTG CTGGGCACCA TGTTCGAGGA 
    GTCGTGGCGT GACCTCGTCG ACGAGGGGTT GATCGACGGC GGGAGGATGG 
    ACAGCTTCAA CATCCCGTCG TACGCTGCGA CGCTGGAGGA GTTCAGGGAG 
    TCCGTCGACG CCGACGGCTC GTTCGCTGTC AACCGGCTGG AGCACGTGAT 
    GGGAGGCCGT CTCGCCGTGG ACGACGACCC CCACGACGAC CGCTGCGCGG 
    TCGGGCGCAG GGTGGCGAAC AACCAGCGAT CGATCTTCGG GCCGCTCGTC 
    GAAGCGCACA TTGGCAGGGC GCTCGCGGAC GAGCTGTTCG TCCGGATGGA 
    GAGGCGCGCA GAAGAGCTCT CCGACGAGCT TGTGGACGAG ATGGGGGTTC 
    GCTTCCACAT CTTGTGCTCG CTTTCACTCG TCTAATGATA TTTACGTCGT 
    ACAATGTCCT AATAATGAAC AAAATATTCA AATTGTGGGC ACAATGATTT 
    AAATATATTA ATTGTATTTG CTAAATAAGT ATGTTTAAAA TATAGCC

    Gene models with high sequence identity

    1. AT5G55250.1 [+] show detail - IAA carboxylmethyltransferase 1
      E-value: 4e-88; Score: 322.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosyl-L-methionine-dependent methyltrans 5.4e-96
    HMMPfam SAM dependent carboxyl methyltransferase 2.1e-93

    See the detailed result >

    AT5G55250.1

    Model type
    Protein coding
    Short Description
    IAA carboxylmethyltransferase 1
    Curator Summary
    Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.
    Computational Description
    IAA carboxylmethyltransferase 1 (IAMT1); CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: gibberellic acid methyltransferase 2 (TAIR:AT5G56300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR