K23021

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23021

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23021

Determination of introduced cDNA(s)

  • J033038K22 - Rice Full-length cDNAs - Original: J033038K22

    full reading [+] show sequence

    Nucleotide sequence: J033038K22 - full reading 
    GACATCGAGA TCAACGATAG AGCCAAGCAC AAACACGAGC TAGACGACGC 
    TATCAGCGAA GCAGAAACAC ACACACACAC ACACAAAATC TCCCGGTGTT 
    TTGTTTAGCA CAGTCTAGTG TTTCCCATGG CGCCCGTGCA GACACCGGAG 
    CAGAGCAACG GGTCACTGAC GTTGAACCCG GTGGTGCAGC GCGTGCTGAG 
    CCGCGGCAAG TCGCTGCTGT CGCCGTCCAC GCCGCGGTCG CCGCCGCCGT 
    CGTACGGGAG CATCGTCACC GTGCTGAGCA TCGACGGCGG CGGCGTGCGC 
    GGCATCATCC CGGGCACCAT CCTCGCGTTC CTGGAGGAGA AACTGCAGGA 
    GCTGGACGGC CCCGAGGCTC GGCTCGCCAA CTACTTCGAC GTGATCGCCG 
    GGACGAGCAC CGGCGGGCTG GTGACCGCCA TGCTCACCGC GCCTAACGAC 
    AACGGCGACC CGCTGTTCGC CGCCAGGGAC ATCAACGACT TCTACCTCGA 
    GCACTGCCCC AGGATCTTCC CTCCCGTCAG CAAGGGGCCT CTCGGTCTGT 
    TCAAGAGCAT GACGGGGCCC AAGTACGACG GCCGGCACCT CCACTCCGTC 
    GTGCAGCAGC TGCTCGGCGA CAAGCGCGTC GACAGCACCA TCACCAACAT 
    CGTCGTCCCG ACCTTCGACA TCAAGCTCCT CCAGCCAACA ATCTTCTCGA 
    CCTACAACGC TCGCAAGGAC GTGTCCAAGA ACGCGCTTCT GTCGGACGTG 
    TGCATCAGCA CGTCGGCGGC GCCGACGTAC CTCCCCGGCC ACCGCTTCGA 
    GACGACGGAC AAGGACGGCA AGCCCCGGGA ATTTAACCTC GTCGACGGCG 
    GCTTCGCCGC GAACAATCCG ACGCTGCTGG CGATGACACA CGTAACCAAG 
    CAGATCCTGC TGGGCTGCCA GGACTTCTTC CCGATCAAGC CGGCGGACTA 
    CGGCAAGTTC ATGATCCTGT CGCTGGGCAC CGGCTCGGCC AAGATCGAGA 
    AGAAGTTCGA CGCCGTCGAG AGCGGCCGGT GGGGCGTCCT CGGCTGGCTG 
    TTCAACAAGG GCGCGACGCC GCTGATCGAC AGCTTCAGCC AGGCCAGCGC 
    CGACCTCGTC GACATCCACG CATCCGTGCT CTTCCAGGCG CTGCACTGCG 
    AGAAGCGCTA CCTCCGCATC CAGGACGACG AGCTCACCGG CGACGCGGCG 
    TCCGTCGACG TCTCCACGCC GGAGAACCTC CAGAGGCTCG TCGGCGTCGG 
    CAAGGCGCTG CTCAAGAAGC AGGCGTGCAA GGTCGACCTC GAGACCGGCA 
    AGAACGAGCC GGACATGAAC CGGAAAAGTA ACGAGGAGGA GCTGGTGCTT 
    TTCGCCGAGA TGCTGTCGCG AGAACGGAAG GCCAGGCTTC AGAAAAAGCA 
    GGGGAGCATG AAGATCTAGT ACATATTGGC AAATTGTAGC AGATCTTCGG 
    ATCAATACTA CAGGTCTACA ACTACTATTG GTGTCAAGTG ATTGGATGTA 
    AAATTTATCC GTTCATATTG GATGTTTGTT GTATCTTCGT AAATTCATGT 
    ACATCTATGT AAGGAAATGA TTCTAAACTC TCGAGAAGAT ATCTATGTGA 
    GTAGTAATGA AAAAAAGCTT TTTACTATC

    Gene models with high sequence identity

    1. AT2G26560.1 [+] show detail - phospholipase A 2A
      E-value: 8e-128; Score: 454.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Acyl transferase/acyl hydrolase/lysophospholipase 7.2e-92
    HMMPfam Patatin 1.2e-20

    See the detailed result >

    AT2G26560.1

    Model type
    Protein coding
    Short Description
    phospholipase A 2A
    Curator Summary
    Encodes a lipid acyl hydrolase with wide substrate specificity that accumulates upon infection by fungal and bacterial pathogens. Protein is localized in the cytoplasm in healthy leaves, and in membranes in infected cells. Plays a role in cell death and differentially affects the accumulation of oxylipins. Contributes to resistance to virus.
    Computational Description
    phospholipase A 2A (PLA2A); FUNCTIONS IN: lipase activity, nutrient reservoir activity; INVOLVED IN: in 6 processes; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (TAIR:AT4G37070.2); Has 2114 Blast hits to 2104 proteins in 375 species: Archae - 0; Bacteria - 479; Metazoa - 231; Fungi - 198; Plants - 897; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR