K23117

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23117

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23117

Determination of introduced cDNA(s)

  • J033038E19 - Rice Full-length cDNAs - Original: J033038E19

    full reading [+] show sequence

    Nucleotide sequence: J033038E19 - full reading 
    GGCCCTAGCT CGCCCGCCCA TGCCGCTGCT CCTGCGCGGC GGCTCCCTCT 
    TCCGTCTATA CGGGTGTGGC TGTGGGCTTC CAAGCGCAAA TTTCAGTCCC 
    AGCAAACTAG CACTGATAAG ACTAAGCTTG ATGATGGCAG AAACACGAGC 
    CACCTATTCG CGTCGAGCTG CCTCTAAGAA TACTGATATC AAGAAAGATG 
    ATGAACATGT CCTTGAAAAG GAGGATGTTG CTGAAAGCAA ATTGGAGATA 
    GAGCAACTTA GGAATGACCC CGATCGACTC CAATCCATGA CAGTGAAGGA 
    GCTCAGGGAA ATCACGAGGA TGATGGGAAT TCCTGTAAAA GGCAACAAGA 
    AAGATTTGGT ATCAGCCCTG ATGGATTCTC TGGGTAAAGT GGGAACTTCA 
    TCAGTTGAGA AGATTGGTGT GTCTGAAGTA CCTTCAAAAA GAAAAGGTGC 
    TTCAGTAGTA GTTGAACAAA ACATAGATAG TTCTGAGGTC ATTTCTGAAA 
    CTCCTAGTAA GAGAAGTAGA GCAAAGAACA AAGGAACCGC TGAGGAGAGT 
    TCTGGGGCTA ATGTCAAGCA AAGCAAGACA TCAGTCCAGA AGAAAAAGCT 
    AGTTGTCCAA GGTGCCAGTG TGGACCATGA AGAACCTTGG ACTGTACTTG 
    TACACAAGAA ACCACAACCT GCCTGGATTC CTTATAATCC TAAGGTCATG 
    AGGTCTCCAT CTCTTAGCAA GGATACGAAG GCTCTAAAGA TTCTGTCATG 
    GAATGTGAAT GGATTAAAAG CTTTACTTAA ATCGAGGGGC TTCTCTATTC 
    ATCAGTTAGC TCAGAGGGAG GACTTCGATA TACTATGCCT ACAAGAGACA 
    AAAATGCAGG AGAAGGATGT AGAAGTCATT AAGGAAGGTC TACTTGAAGG 
    CTATACCCAT AGTTTCTGGA CATGCAGTGT ATCAAAGCTT GGCTATTCGG 
    GGACTGCAAT AATTTCAAGG GTGAAACCAC TCTCTATCAA GTACGGGCTT 
    GGTGTGCCAG ACCATGATAC TGAAGGGAGG GTCGTCACAG TGGAGTTCAA 
    TGATTTTTAC CTCCTGACTG CTTATGTACC AAATTCTGGT GATGGTCTAA 
    AAAGATTGAC TTACAGGGTC ACAGAATGGG ATCCAAGCCT TGGTAACTAC 
    ATGAAAGACT TGGAAAAATC GAAGCCTGTT ATACTAACTG GTGATCTTAA 
    CTGTGCCCAT CAAGAGATTG ATATACATGA TCCTGCTGGA AATCGTAGAA 
    GTGCAGGCTT TACAATTGAA GAAAGGGAAT CATTCGAGAC TAATTTTTTG 
    TCCAAAGGTT TTGTTGATAC ATTTCGAAAA CAGCATCCCA ATGTTGTTGG 
    ATATAGTTAC TGGGGTTATA GGCATAATGC CCGGAAGACC AACAAAGGTT 
    GGCGTCTGGA TTATTTTCTT GTGTCTGAAT CCATTGCAGA AAGAGTCCAT 
    GATTCATACA TTATTCCAGA CATATCTGCC AGTGATCACA GCCCGCTAGG 
    CCTCGTACTG AAGCTCTAGG CAGGCTGCAT GCCTGGAACC CAATACGGAC 
    TTCTGGGTTT AGTTAACAAT GTTTTCCTGC TGTGAGTCTG TGGGAGGGTA 
    TGTGGTTTTG TATCAGTAGG TTCTAATACT AGCCTAACGG ATGTGGATGT 
    GTTACACCAA TCCGATGTTG GAAAAAAGGC TGGTTTCGAT ATGTAGCCGA 
    ATGAGTCTGG GTGATGTAGT GTTGTTACAC TTCCTTAAGC TGCATTGACA 
    GATCGTAATG CGGGGTCTGC ACTTTTCACG TTTTCAGTGG AGTAGCTCAG 
    TATTGGAATT CGATGGTAAT ATCATGATTC GTAGCC

    Gene models with high sequence identity

    1. AT2G41460.1 [+] show detail - apurinic endonuclease-redox protein
      E-value: 5e-140; Score: 495.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan DNA-binding SAP 10.406
    ProfileScan Exodeoxyribonuclease III xth 51.02
    PatternScan AP endonuclease, family 1, binding site 0
    PatternScan AP endonuclease, family 1, conserved site 0
    PatternScan AP endonuclease, family 1, conserved site 0
    HMMSmart DNA-binding SAP 0.00015
    HMMPfam Endonuclease/exonuclease/phosphatase 4.4e-46
    HMMPfam DNA-binding SAP 5.9e-09
    Coil coiled-coil 0
    Gene3D no description 1e-78
    superfamily Endonuclease/exonuclease/phosphatase 2.9e-75
    superfamily SAP domain 1.4e-06
    HMMTigr AP endonuclease, family 1 2e-91
    HMMTigr Exodeoxyribonuclease III xth 3.9e-132
    HMMPanther Exodeoxyribonuclease III xth 2e-93

    See the detailed result >

    AT2G41460.1

    Model type
    Protein coding
    Short Description
    apurinic endonuclease-redox protein
    Curator Summary
    apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.
    Computational Description
    apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: AP endonuclease, family 1, conserved site (InterPro:IPR020848), DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), AP endonuclease, family 1, binding site (InterPro:IPR020847), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 8976 Blast hits to 8966 proteins in 2340 species: Archae - 119; Bacteria - 5352; Metazoa - 387; Fungi - 388; Plants - 165; Viruses - 2; Other Eukaryotes - 2563 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR