K23133

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23133

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23133

Determination of introduced cDNA(s)

  • J033030K18 - Rice Full-length cDNAs - Original: J033030K18

    full reading [+] show sequence

    Nucleotide sequence: J033030K18 - full reading 
    AAAAGTCATC GCCATCATCG ATCGATCGAT CACAACTACT AGAAATCCAG 
    CCAAGAAGAT CGAGACCGGA TACAGCTAGC AATCCATCCA AGAAGATCGA 
    GAGAGCGGAT ACAGCTAGCC TAGCTACGCG AAGGATCAGA TCATCGGCAT 
    GGAGCTGGAG CTTGGGCTGG CGCCACCGAA TTCCGGTCAT CTCGTCGTCG 
    ACGAGCTCAG CAGCAGCAGC AGCAGCGGCG GCGGCAGCGG CAGCGCGCCG 
    GTGTCTGCCT CGTCGGCCGG GAAGAGGGGA TTCAGGGAGG CGTTCCAGGA 
    GACGCTGCTG CTCTTCGACG ACGGCAGCTG CTGCAACACC AGCGACGACG 
    ATTGCAGGAG GAGGAAGAAG ACGGTGGTGG GGTGGCCACC GGTGAGCTCG 
    GCGCGGCGGG CGTGCGGCGG CGCCAACTAC GTGAAGGTGA AGAAGGAAGG 
    CGACGCCATC GGGAGGAAGG TTGATTTGGC CCTCCATTCC TCCTACGACG 
    AGCTCGCTGC CACGCTCGCC CGCATGTTCC CCACCAACGA CCACCAAGGC 
    GAGAAGAAAA TGGCCAATGA TGATCATGGC GATGCCGCTG GACCTGTGGT 
    CACCTACGAG GATGGTGATG GGGATTGGAT GCTGGTTGGG GACGTGCCAT 
    GGGATGATTT TGCACGATCT GTGAAACGCC TGAAGATACT GGGTTAACTG 
    AACTGAAGGA GATGCATGCG TGAGTTGATG GAGCACAGCT CGGTTTTGGT 
    TGCCTGGCAT CTGCGTGTGG GTGTGCACTG ATGTATGTAC ATGTTTTCGT 
    TTTCAGTCAG GATGTTAGGA CGAGAGAAAG AGCTTTCTGT CAAAGACTAT 
    ATACTGCTAG CTTATATATA CTGTAGTTGG GCACATCTCA TGTGTGCCCA 
    GGGCTAGGTT TTGAGAATGT TTACAGAGTT CTGTGTTTTT ACACCTTCTA 
    TATGTTTTGC AAACTGATCT TGTACTATAA TACTACTTTT ATTTATTTCT 
    CTCTTTTTTT TC

    Gene models with high sequence identity

    1. AT3G23030.1 [+] show detail - indole-3-acetic acid inducible 2
      E-value: 1e-19; Score: 94.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Aux/IAA-ARF-dimerisation 30.245
    HMMPfam AUX_IAA 1.3e-36

    See the detailed result >

    AT3G23030.1

    Model type
    Protein coding
    Short Description
    indole-3-acetic acid inducible 2
    Curator Summary
    auxin inducible gene expressed in the nucleus
    Computational Description
    indole-3-acetic acid inducible 2 (IAA2); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible (TAIR:AT4G14560.1); Has 2163 Blast hits to 2162 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2162; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR