K23215

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23215

Determination of introduced cDNA(s)

J023020L23 - Rice Full-length cDNAs - Original: J023020L23

full reading [+] show sequence

GCCCCTTGCA CACTCATTCT CTAGAGAAGG GAGAGAGAAG AGTGTAGTAG 
TAGCTAGCTA GGAGAAAGAG AGAGATAGAG AGAGAAACAA TGGACAGGAG 
AGCAGTAGTG TATGATGCTG AAGCAGTTGA TGATCATGAG AGACAAGGGA 
CGGTGTGGAC GGCGACGTCG CACATCGTGG CGGCGGTGGT CGGCTCCGGC 
GTGCTGGCGC TGGCGTGGAC GGTGGCGCAG CTGGGGTGGG TGGTGGGGCC 
CCTCGTCCTC GTTGGCTTCT CATGTGTCAC TTACTACACA TCTACCCTCC 
TCGCCAATTG CTACCGCTAC CCCGACCCCG TCACCGGCAC CGCCAACCGC 
GAGTACATCG ACGCCGTTCG CTGCTACCTC GGGCCGAAGA ACGTGATGTT 
GTGTGGGTGT GCGCGGTATG TCAACCTGTG GGGTACACTT GTCGGGTACA 
CCATCACAGC GAGTGCAAGC ATGATAGCGG TGAAGCGGGT GAACTGCTTC 
CACCGGGAAG GGTACGGCGC CGGCGACTGC GGCGCGTCGG GGAGCACGTA 
CATGGTGGTG TTCGGCGTCT TCCAGCTCCT CCTCTCCCAG CTCCCCTCCC 
TCCACAACAT CGCCTGGCTC TCCGTCGTCG CCGTCGCCAC CTCCTTCGGC 
TACTCCTTCA TCAGCCTCGG CCTCTGCGCC GCCAAGTGGG CCTCCCACGG 
CGGCGCCGTC CGCGGCACCC TCGCCGGCGC CGACCTCGAC TTCCCCCGCG 
ACAAGGCCTT CAACGTCCTC CTCGCCCTCG GCAACATCGC CTTCTCCTAC 
ACCTTCGCCG ACGTCCTCAT CGAGATCCAG GACACGCTCC GCTCGCCGCC 
GGCGGAGAAC AAGACCATGA AGAGGGCCTC CTTCTACGGC CTCTCCATGA 
CCACCGTCTT CTACCTCCTC CTCGGCTGCA CCGGCTACGC CGCCTTCGGC 
AACGACGCCC CCGGCAACAT CCTCACCGGC TTCGCCTTCT ACGAGCCCTT 
CTGGCTCGTC GACATCGCCA ACATCTGCGT CATCGTCCAC CTCATCGGCG 
CCTACCAAGT GTTCGCGCAG CCGATCTTCG CGAGGCTGGA GAGCTACGTG 
GCGTGCCAGT GGCCGGACGC CAAGTTCATC AACGCGACCT ACTACGTGAG 
GGTGCCGGGG AGGTGGTGGC CGGCGGCGAC GGTGGCGGTG GCGCCGCTGA 
AGCTGGTGCT GCGGACGATC ATCATCATGT TCACCACGCT GGTGGCGATG 
CTCCTCCCCT TCTTCAACGC CGTGCTGGGC CTCATCGGGG CGCTCGGCTT 
CTGGCCGCTC TCCGTCTACT TCCCGGTGAG CATGCACGTC GCCCGCCTCG 
GCATCCGCCG CGGCGAGCCG CGGTGGTGGT CGCTGCAGGC CATGAGCTTC 
GTCTGCCTCC TCATCTCCAT CGCCGCCAGC ATCGGCTCCG TCCAGGACAT 
CGTCCACAAC CTCAAGGCTG CTGCACCCTT CAAGACTGTC AACTGATCGA 
TGATCATTAA TTTGATCGCT TATTAAGTGG TTAAATTATT CAGTTAATTA 
ATGATCGATG ATCTAGTTGT TAGCTCAGCA ACAAGCACCA TCAGCCATCA 
GGGAGCTGCC TAGCTAGAGC TGTGGCCTCA TTTTGTTTCT AATTTCTTTC 
TCTCTGTTTT TTTTTTGGTG AATGATTGAT CGATCTCAAT GTACTGAGGT 
TGGTTAATTT TTCTTGCTGC TGGTTAATTT GGGCTTAATT TTGATCTTGG 
AGTAACTAGA AAACATGTAA TTCATCGTGT TGAGGATGAG CAATGCAAGA 
AAGAAAATAA TTATTCGCC

Gene models with high sequence identity

AT5G49630.1 [+] show detail - amino acid permease 6
E-value: 1e-126; Score: 451.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Amino acid transporter, transmembrane	6.2e-93
HMMPanther	AMINO ACID TRANSPORTER	3.8e-84

See the detailed result >

AT5G49630.1

Model type: Protein coding
Short Description: amino acid permease 6
Curator Summary: Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.
Computational Description: amino acid permease 6 (AAP6); FUNCTIONS IN: acidic amino acid transmembrane transporter activity, neutral amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: response to water deprivation, response to salt stress, aspartate transport, tryptophan transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 1 (TAIR:AT1G58360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR