K23306

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23306

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23306

Determination of introduced cDNA(s)

  • J023042I23 - Rice Full-length cDNAs - Original: J023042I23

    full reading [+] show sequence

    Nucleotide sequence: J023042I23 - full reading 
    GATCCGCTAG CTTCATCTCC ACTAGTCTCA TCCCTCCTTC TCCCTCTCCT 
    CGTTGAACAC CGCACTATCA AATCACCCAG CTGAAAGCCA AGACCGCGCG 
    CGCCGGCCGG CCGGGCAGGG ATCACCTAGC TAGGATACGC GCCATGATGT 
    CGTCGGCGCC GGAGACGTTC TCGCTGGACC ACCTCTCGCA GCATCAGCAG 
    CAGCAGCCGC CGCCGCTCGC CGAGCAGGAG CAGCTCTGCT ACGTGCACTG 
    CAACTTCTGC GACACCATCC TCGCGGTGGG CGTGCCGTGT AGCAGCCTGT 
    TCAAGACGGT CACCGTGCGG TGCGGCCACT GCGCCAACCT GCTCTCCGTC 
    AACCTCCGCG GCCTCCTGCT CCCGGCCGCC GCCTCCACCG CCAACCAGCT 
    CCCCTTCGGC CAGGCTCTCC TCTCCCCCAC CTCACCGCAC GGCCTCCTTG 
    ATGAGGTGCC GTCATTCCAA GCGCCGGCGA GCCTAATGAC CGAACAGGCG 
    AGTCCCAACG TGAGCAGCAT CACGAGCAGC AACAGCAGCT GTGCTAACAA 
    CGCGCCGGCG ACGTCGATGG CGTCGGCGGC CAACAAGGCT ACCCAGCGAG 
    AGCCGCAGCA GCCGAAGAAC GCGCCGTCAG CCAACAGGAC TTCAGAGAAG 
    CGGCAGAGGG TTCCCTCGGC ATACAACCGA TTCATCAAAG ATGAGATACA 
    ACGCATCAAG GCAAGCAATC CGGACATCAC CCACAGGGAG GCTTTCAGCG 
    CTGCTGCCAA GAACTGGGCC CATTTCCCAC ACATCCATTT TGGCCTGATG 
    CCGGACCAGG GCCTGAAGAA GACCGGCATA CAAAGCCAGG ACGGAGCTGG 
    GGAATGCATG CTCTTCAAGG ACGGTCTCTA CGCTGCAGCC GCCGCCGCTG 
    CAGCAGCCAC AGCAGCATCT AGCATGGGTG TCACTCCATT CTAACGCCTC 
    AGATCAATGC ACGATCTGGC TTAAAAAAAA CTTTGTGTCC CACCCTGTAG 
    TTAGGGTCCT GCATGTCTCG ATCTCCAGAT ATGATCTCCG GTTGCTTGTT 
    AACTGAAATG TTCCTCTATA TATGGACGAT CATGGCACCA TATGCATGGC 
    ATCTTGGCAT GCATCGATCG TATCTAAGTC CTTATCTATG TGTAATTCTA 
    GTTTTCTCAG TTTCTTCATG TATTTTCCCC TTAATTTTTC CTATTCCTAT 
    TCGCATGTAC AGAGGCTGCT AGCTGTGCGT GCTGCCTCTT ATATATCTTA 
    TGGACATAAC TAGATCGATT TGGTTTAATT ACCAGGTGAT CATTTGAAAT 
    C

    Gene models with high sequence identity

    1. AT2G45190.1 [+] show detail - Plant-specific transcription factor YABBY family protein
      E-value: 1e-44; Score: 177.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily High mobility group, superfamily 1.9e-06
    HMMPfam YABBY protein 2.8e-62

    See the detailed result >

    AT2G45190.1

    Model type
    Protein coding
    Short Description
    Plant-specific transcription factor YABBY family protein
    Curator Summary
    Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).
    Computational Description
    ABNORMAL FLORAL ORGANS (AFO); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT4G00180.1); Has 454 Blast hits to 452 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 436; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR