K23449

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23449

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Original: K23449

Determination of introduced cDNA(s)

  • J023031C24 - Rice Full-length cDNAs - Original: J023031C24

    full reading [+] show sequence

    Nucleotide sequence: J023031C24 - full reading 
    ACCAGAAAAC CCCCACGAGC CGCGGCCATG GCGACCACCA CCACCACCCC 
    CTCCTCCTCT CTCACCGCCC CTCTCCTCCG CCCGAGCTCG AACGCGAACC 
    CCGCCCCGAG ATCTCTGCCG CTCCTCAGGA GCCGGAGGTG CGCTCGGGCC 
    GTGGCGACCG CCGCCGCCGC CGCTGGCCAC GGGGCCGCTC ATCAGAGGAG 
    CGGGATTTGG TCGATCAGGG ATGATTTGGT GGTGCCGAGG TCGCCCTACT 
    TCCCTGTGGA GTATGCGTCG GGGCAGGAAC GCGGGCCATC GCCCATGGTG 
    ATGGAGCGGT TCCAGAGCGT CGTCAGCCAG CTCTTCCAGC ACAGGATTAT 
    CCGGTGTGGT GGACCCGTGG AGGATGATAT GGCGAACATC ATCGTTGCCC 
    AGCTGCTATA TCTCGATGCC ATCGATCCTA ACAAGGATAT CATTATGTAT 
    GTGAATTCTC CTGGAGGATC AGTGACAGCT GGGATGGCCA TATTCGACAC 
    GATGAAGCAT ATCAGACCTG ATGTTTCCAC AGTTTGTATT GGACTTGCTG 
    CAAGTATGGG AGCTTTTCTG CTTAGTGCTG GGACAAAAGG GAAGCGATAC 
    AGCTTACCTA ACTCAAGAAT AATGATCCAT CAACCTCTCG GAGGAGCCCA 
    AGGACAAGAG ACTGATCTTG AGATCCAGGC TAATGAGATG CTGCATCACA 
    AGGCTAACCT GAATGGATAC CTAGCATACC ACACTGGGCA GCCCCTAGAT 
    AAGATCAACG TAGATACTGA CCGTGATTAC TTCATGAGCG CGAAGGAGGC 
    AAAGGAGTAT GGTCTAATTG ATGGAGTTAT CACGAATCCC CTTAAAGCCC 
    TTCAACCGCT TCCTGCTTCT AGTTAGCCAT GGAGTGCTCA ATCTCCACGG 
    AGCATTTTTT GGTTATCTTT TAGAACTGTT ATTGCATCCA CTGTTTTTAT 
    TAGCTTGGCA AGATAGTTTT GCGATTCCAC AAGCAACCAC ATCCTGAGGC 
    TTCAAAGTTT GTACAATACA GATGTACTAC TAGGAGGATA TCTTCTGCGA 
    TGAATATTGC AACTTATTTG ATGTACTATT AGGAGGATAT CTTCTGCG

    Gene models with high sequence identity

    1. AT1G02560.1 [+] show detail - nuclear encoded CLP protease 5
      E-value: 6e-104; Score: 374.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily ClpP/crotonase 1.8e-57
    PatternScan Peptidase S14, ClpP, active site 0
    PatternScan Peptidase S14, ClpP, active site 0
    HMMPfam Peptidase S14, ClpP 2.5e-78
    FPrintScan Peptidase S14, ClpP 3.2e-48
    FPrintScan Peptidase S14, ClpP 3.2e-48
    FPrintScan Peptidase S14, ClpP 3.2e-48
    FPrintScan Peptidase S14, ClpP 3.2e-48
    FPrintScan Peptidase S14, ClpP 3.2e-48
    Gene3D no description 8.3e-69
    HAMAP CLPP_MF_00444 39.801
    HMMPanther Peptidase S14, ClpP 1.2e-80

    See the detailed result >

    AT1G02560.1

    Model type
    Protein coding
    Short Description
    nuclear encoded CLP protease 5
    Curator Summary
    One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
    Computational Description
    nuclear encoded CLP protease 5 (CLPP5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 3 (TAIR:AT1G66670.1); Has 13512 Blast hits to 13510 proteins in 3028 species: Archae - 2; Bacteria - 8525; Metazoa - 147; Fungi - 82; Plants - 1082; Viruses - 85; Other Eukaryotes - 3589 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR