K23529

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23529

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23529

Determination of introduced cDNA(s)

  • J033136J17 - Rice Full-length cDNAs - Original: J033136J17

    full reading [+] show sequence

    Nucleotide sequence: J033136J17 - full reading 
    ACTTGAGCCT CTCTTCCTTC CCCTTCCTCT TCCCATCGCG ATACCTCCTC 
    CTTCCCGTCG AACCCTCTCC AGTCTCCACT CCACTGAATC CTCCCACCTC 
    GGCTCGAAGG AATGGCAAGC GGTAGTGAAG CTGAGAAGTC ACCTGAGGTT 
    GTGCTGGAGT GGCCTAAGAA GGACAAGAAG AGGCTTCTAC ATGCTGTTTA 
    CCGTGTTGGA GATTTGGATC GCACCATTAA ATGTTACACA GAATGCTTTG 
    GAATGAAATT ACTGAGGAAA AGAGATGTGC CTGAAGAGAA ATATACGAAT 
    GCATTTCTTG GGTTTGGACC TGAGGACACC AACTTTGCAC TTGAATTGAC 
    ATACAATTAT GGTGTTGATA AGTACGACAT TGGAGCAGGA TTTGGGCATT 
    TCGCTATTGC AACTGAGGAC GTGTACAAAT TGGCTGAGAA AATTAAATCC 
    AGTTGTTGCT GCAAGATCAC TCGTGAACCT GGTCCTGTCA AGGGAGGATC 
    CACTGTGATT GCCTTTGCAC AGGATCCTGA CGGTTACATG TTTGAGCTTA 
    TCCAGAGGGG TCCAACACCT GAGCCTCTTT GCCAAGTTAT GCTTCGTGTG 
    GGTGACCTTG ATCGCTCCAT CAAGTTCTAC GAGAAGGCCC TTGGTATGAA 
    GCTGCTGAGG AAGAAGGATG TACCTGACTA TAAGTATACC ATTGCCATGT 
    TGGGCTATGC TGATGAGGAT AAGACAACTG TTATTGAGTT GACATACAAC 
    TATGGTGTCA CAGAATATAC CAAGGGCAAC GCATATGCTC AGGTTGCTAT 
    TGGCACTGAA GATGTCTACA AGAGTGCTGA GGCTGTTGAG TTGGTTACAA 
    AAGAACTAGG GGGAAAGATT TTGCGGCAGC CAGGTCCACT ACCAGGGCTC 
    AACACAAAGA TTGCCTCTTT CCTTGACCCT GATGGCTGGA AAGTGGTTTT 
    GGTTGATAAC GCCGACTTCC TGAAGGAACT CCAGTGAAGA TGAGAGATGG 
    CCCAAGTTCT GTGCTAGGAG GCAAAGCACA AACCTTATGT AGTAATGCCA 
    GTGCAATGTA ATAAAGAAGC GGTTTCCGCT CTATGAACAA GAATAAATTC 
    TGGCACATGC GTTGTGCTTA TGCTAGTACT GTCTGGGTTT GGCTGTAAAT 
    CCGCTATGCA TTGCTACCTG TATCAGCATG ACTGTTGGAG TGTTGTTGAT 
    AACAAGGACC AGTTTGTGCA GTTGAGCTGA GTTTCCTG

    Gene models with high sequence identity

    1. AT1G11840.6 [+] show detail - glyoxalase I homolog
      E-value: 1e-124; Score: 443.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glyoxalase I, conserved site 0
    HMMTigr Glyoxalase I 9.3e-84
    HMMTigr Glyoxalase I 3e-45
    Gene3D no description 1.4e-38
    Gene3D no description 7.8e-35
    superfamily Glyoxalase/Bleomycin resistance protein/Dihyd 1.4e-44
    HMMPanther LACTOYLGLUTATHIONE LYASE (GLYOXALASE I) 1.7e-80
    HMMPfam Glyoxalase/bleomycin resistance protein/dioxygenase 1.2e-19
    HMMPfam Glyoxalase/bleomycin resistance protein/dioxygenase 1.9e-13

    See the detailed result >

    AT1G11840.6

    Model type
    Protein coding
    Short Description
    glyoxalase I homolog
    Curator Summary
    Encodes a glyoxalase I homolog ATGLX1.
    Computational Description
    glyoxalase I homolog (GLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1).
    Link
    InterPro Scan - TAIR