K23905

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23905

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23905

Determination of introduced cDNA(s)

  • J023097P16 - Rice Full-length cDNAs - Original: J023097P16

    full reading [+] show sequence

    Nucleotide sequence: J023097P16 - full reading
    GAGAAGCCAA AGCAAACCGA AGCCCAGTTT CTCTCTCCTC CTCCTCTTCC 
    TCCTCGCATC AGTCCGCATA AAGTCTCCTC CCCTTCCCCC TCCTCCTCCT
    CCTCTCCAAT CTTGGCAGCA GCAGCAGCAA AGGGGCGGTG GGTTCTTTGT
    CTCTCTCTCT CGGGCGGATT TCGGTTTCTT CGTGTGTTTG TTGGTTGCGT
    TGGCGTTTGG AGCGGCGGCG GTGGCGGTGA GTGTGAGTGG TGAGGAGGAG
    GAGGCCGCCA TGGGCGCGGG CGGGAGGTGG GTGGAGGAGT ACGGGCGTTC
    GTCGTCGCCG TCGTCCAACC TGCAGTGCTT CTTGGACTGC ACCACCCCCG
    CCGTCGACAC GCACCTCCTC CCCAAGGCGA ATGGCCGGTT TTCGAGCGAT
    TCTTGGCACC ACGCCGAGAT GGACAGCGTC GAGTACTTCA ACCTCGCGGA
    CCTATGGGAG CAGTACTATG AGTGGAGCGC GTACGGGGCT GGAACTACGG
    TGCAGCTGTA TGGAGGGGAA AGAGTAGTCC AATACTATGT TCCCTACTTG
    TCAGGGATAC AGCTATATAC CAACAAAGCC CAGACTGCAT CCAGGAGTTT
    TGGTGAAGAT AATGGCATGG ACTATTGGAG CGATGATGAG GACAATGAGA
    AGATGTCAAG ATCTTGGAGT TCAACATCTG AAGACTCATT ATTTAACTGT
    GATGCAATAA GTGGCAATAG AAAACGCCAC GGGCACATGT ATTTTGAGTT
    CTTCGAGGTT TGCTCTCCTT ATGGAAGGAT TCCACTCATT GACAAGGTGT
    ATGAACTATC CCAGAGCTAT CCTGGGTTGA CATCCCTGAG AAGTGTTGAC
    CTTTCGCCTG CTAGTTGGAT GTCAGTTGCC TGGTATCCCA TCTACCATAT
    TCCCTACCAG CGCAATGTGA AGGACTTATC TGCATGCTTC CTAACTTATC
    ATACCATTTC CTCTTCATTT CAAGATTACG CGCTCGAGAG CATGGCCAAC
    GGGAAGCGAA ACGACGAGAC GGAGAAGAAG GTCAGCAAGA CTCATCTTGC
    TCCGTTCGGG CTCGCGGCGC ACAAGCTGCA GGGTTCTCTC TGGACCAACC
    CGAGAACAGG GGACCGTGAC AGGATGGTCT CCCTCTTCGG CGCCGCGGAT
    TCCTGGCTCA AGCAGCTCGG AGTCCAGCAC CATGACTACA ACTACTTCAT
    CACTCACCCC ATGTGATCTG AACAGCTGAT CTGTGTCATC TGAGAAGAGT
    AGGTTGCAAC TTGCAAAGAA ACCCCATGGC TGCAGACTTT GGAGAGGAGG
    CATCAGATTT TTACTTACCC CAGCGACAAT GGTAGCAAAC GTTTTACCGT
    TTTGTCAAAA TGACACTGAC ATTTGCCGGA TAGAGTTTTA TACCGCTTGA
    GACTTGAGAC TTGAGAGTTT ACCTGCAGCT GAATATATAC CGAATATATC
    AGGACTTATA GGTTTTGTGT TTTTCTTGGC TGAAGATGTA AACCGACCGT
    GTACAGAAAG TTTTGGAACT ATTTTGATAT CCAATATATG TCGTGGTTGG
    AATTGGATTC

    Gene models with high sequence identity

    1. AT4G03420.1 [+] show detail - Protein of unknown function (DUF789)
      E-value: 1e-81; Score: 300.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G03420.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF789)
    Computational Description
    Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G03610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR