K23920

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23920

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23920

Determination of introduced cDNA(s)

  • J023020L23 - Rice Full-length cDNAs - Original: J023020L23

    full reading [+] show sequence

    Nucleotide sequence: J023020L23 - full reading 
    GCCCCTTGCA CACTCATTCT CTAGAGAAGG GAGAGAGAAG AGTGTAGTAG 
    TAGCTAGCTA GGAGAAAGAG AGAGATAGAG AGAGAAACAA TGGACAGGAG 
    AGCAGTAGTG TATGATGCTG AAGCAGTTGA TGATCATGAG AGACAAGGGA 
    CGGTGTGGAC GGCGACGTCG CACATCGTGG CGGCGGTGGT CGGCTCCGGC 
    GTGCTGGCGC TGGCGTGGAC GGTGGCGCAG CTGGGGTGGG TGGTGGGGCC 
    CCTCGTCCTC GTTGGCTTCT CATGTGTCAC TTACTACACA TCTACCCTCC 
    TCGCCAATTG CTACCGCTAC CCCGACCCCG TCACCGGCAC CGCCAACCGC 
    GAGTACATCG ACGCCGTTCG CTGCTACCTC GGGCCGAAGA ACGTGATGTT 
    GTGTGGGTGT GCGCGGTATG TCAACCTGTG GGGTACACTT GTCGGGTACA 
    CCATCACAGC GAGTGCAAGC ATGATAGCGG TGAAGCGGGT GAACTGCTTC 
    CACCGGGAAG GGTACGGCGC CGGCGACTGC GGCGCGTCGG GGAGCACGTA 
    CATGGTGGTG TTCGGCGTCT TCCAGCTCCT CCTCTCCCAG CTCCCCTCCC 
    TCCACAACAT CGCCTGGCTC TCCGTCGTCG CCGTCGCCAC CTCCTTCGGC 
    TACTCCTTCA TCAGCCTCGG CCTCTGCGCC GCCAAGTGGG CCTCCCACGG 
    CGGCGCCGTC CGCGGCACCC TCGCCGGCGC CGACCTCGAC TTCCCCCGCG 
    ACAAGGCCTT CAACGTCCTC CTCGCCCTCG GCAACATCGC CTTCTCCTAC 
    ACCTTCGCCG ACGTCCTCAT CGAGATCCAG GACACGCTCC GCTCGCCGCC 
    GGCGGAGAAC AAGACCATGA AGAGGGCCTC CTTCTACGGC CTCTCCATGA 
    CCACCGTCTT CTACCTCCTC CTCGGCTGCA CCGGCTACGC CGCCTTCGGC 
    AACGACGCCC CCGGCAACAT CCTCACCGGC TTCGCCTTCT ACGAGCCCTT 
    CTGGCTCGTC GACATCGCCA ACATCTGCGT CATCGTCCAC CTCATCGGCG 
    CCTACCAAGT GTTCGCGCAG CCGATCTTCG CGAGGCTGGA GAGCTACGTG 
    GCGTGCCAGT GGCCGGACGC CAAGTTCATC AACGCGACCT ACTACGTGAG 
    GGTGCCGGGG AGGTGGTGGC CGGCGGCGAC GGTGGCGGTG GCGCCGCTGA 
    AGCTGGTGCT GCGGACGATC ATCATCATGT TCACCACGCT GGTGGCGATG 
    CTCCTCCCCT TCTTCAACGC CGTGCTGGGC CTCATCGGGG CGCTCGGCTT 
    CTGGCCGCTC TCCGTCTACT TCCCGGTGAG CATGCACGTC GCCCGCCTCG 
    GCATCCGCCG CGGCGAGCCG CGGTGGTGGT CGCTGCAGGC CATGAGCTTC 
    GTCTGCCTCC TCATCTCCAT CGCCGCCAGC ATCGGCTCCG TCCAGGACAT 
    CGTCCACAAC CTCAAGGCTG CTGCACCCTT CAAGACTGTC AACTGATCGA 
    TGATCATTAA TTTGATCGCT TATTAAGTGG TTAAATTATT CAGTTAATTA 
    ATGATCGATG ATCTAGTTGT TAGCTCAGCA ACAAGCACCA TCAGCCATCA 
    GGGAGCTGCC TAGCTAGAGC TGTGGCCTCA TTTTGTTTCT AATTTCTTTC 
    TCTCTGTTTT TTTTTTGGTG AATGATTGAT CGATCTCAAT GTACTGAGGT 
    TGGTTAATTT TTCTTGCTGC TGGTTAATTT GGGCTTAATT TTGATCTTGG 
    AGTAACTAGA AAACATGTAA TTCATCGTGT TGAGGATGAG CAATGCAAGA 
    AAGAAAATAA TTATTCGCC

    Gene models with high sequence identity

    1. AT5G49630.1 [+] show detail - amino acid permease 6
      E-value: 1e-126; Score: 451.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Amino acid transporter, transmembrane 6.2e-93
    HMMPanther AMINO ACID TRANSPORTER 3.8e-84

    See the detailed result >

    AT5G49630.1

    Model type
    Protein coding
    Short Description
    amino acid permease 6
    Curator Summary
    Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.
    Computational Description
    amino acid permease 6 (AAP6); FUNCTIONS IN: acidic amino acid transmembrane transporter activity, neutral amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: response to water deprivation, response to salt stress, aspartate transport, tryptophan transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 1 (TAIR:AT1G58360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR