K23926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23926

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23926

Determination of introduced cDNA(s)

  • J033116N08 - Rice Full-length cDNAs - Original: J033116N08

    full reading [+] show sequence

    Nucleotide sequence: J033116N08 - full reading 
    GACTTACGGC CCAAACAAGG CCCAAAAGGT TTCTGCTTTC AGCCTTCTTC 
    ATGCCAAAAC CCCAATCCGG CCGGCGACTC TCCGACATCC CGGCCGGCGA 
    CCATGGCGGC GGCGGCGGCG GAGGTAGCAG CAGCGGGAGG AGGAGGAGAG 
    ATGGTGGTCG TCCGCCTGCC TCCCCTTTCC CAGGACGACC CCCTCTTCCA 
    AGACAAGAAG AGGATATTGG ACAGTAGAAA CTTATCCTGT CTATTTCAAG 
    TTCCAAACTC ATGTTCTGCT GCTGATGCCT TCAAAGTACT GGATAGGATA 
    ATCCAAGCTG CTAGGATAGC TCATATGGAT GAGCTTGAGC TTTATTTTAC 
    TGGAGACGAT GATTTCGGGC CATTATCTAC AAGGAATGAA CTTGAATCTC 
    TAAATTTGTT GCTCAAAATT TTGAACACGT TGCTTCTGAC TGCCAATGTT 
    GGTGCCATGG GAGTTTTGCA AGTCCTACGT GATGAAATAC TTATTAGGCT 
    CAGATCTCTT GAGTTGGAAG ACAATGACCA AATGGTAGTT CAAATACGAA 
    ACCAGAACAT GGAAGATTCT CTTCTGAAAT GGGGGGAGCA ACATGGTGTT 
    AAAACTAAAT TGCAAATAGC ATTTTTTGAA GGAGCTGGGA GAGGAATGGT 
    AGCTTCTGAA AACATAGATG TGGGGGATAT TGCACTTGAA ATTCCAGAGT 
    CTTCTATCAT ATCTGAGGAA CTTCTCTGCC AGTCTGGCAT GTTTCTTGCA 
    TTAAAAGATT TAGATAGCAT CACCACTGAG ACTATGCTAT TGTTGTGGAG 
    CATCAGAGAG CGGTACAATC CATCTTCAAA GTTTAAGATA TACTTCGAGG 
    CACTCCCAGC AAATTTCAAT ACAGGGCTGA GTTTTGGAAT TGATGCACTT 
    GCTGCATTGG AAGGAACCCT TCTTTTTGAT GAGTTAATGC AAGCTAGGCA 
    GCATTTGCGC CAGCAGTATG ATGAGTTATT TCCAATGCTG TGCATAAAGT 
    TTCCTGATAT ATTCAAACAA GACGTGTATA CCTGGGACAA TTTTCTATGG 
    GCATGTGAAT TATGGTATTC TAACAGTATG ATGGTTGTAT TAAGTAGTGG 
    GAAATTAACA ACTTGCTTGA TTCCTATTGC CGGACTTCTG AACCACTCGG 
    TTTCTCCTCA CATTCTTAAC TATGGTCGGG TAGATAAAGT TACGAAATCT 
    TTGAAATTTC CTCTGTCTAG ACCATGCAAA GCAGGGGAGC AATGTTTTCT 
    CAGTTATGGG AAGCATCCAG GATCTCATCT TATCACTTTC TATGGTTTTC 
    TACCAAGAGA CAACCCTTAT GATGTTATAC CTTTAGATCT TGATACATCT 
    GTGGATGAAG AAGACAGTTC ATCTCCGTCC GTAACTACAA GCCAAACCAG 
    TCATATGGTA CGTGGGACAT GGCTGTCCAG ATTAAGAGGA CCTCCGACGT 
    ATGGGCTGCC TCATCGCTTG GTATCCCATC TCCATGCCAT TCTAGGTTGT

    Gene models with high sequence identity

    1. AT2G18850.2 [+] show detail - SET domain-containing protein
      E-value: 2e-91; Score: 333.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam SET domain 2.8e-05
    Gene3D no description 8.4e-59
    HMMPanther UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 3.6e-55
    superfamily SET domain 1e-45

    See the detailed result >

    AT2G18850.2

    Model type
    Protein coding
    Short Description
    SET domain-containing protein
    Computational Description
    SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1).
    Link
    InterPro Scan - TAIR