K24010

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24010

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24010

Determination of introduced cDNA(s)

  • J033033G23 - Rice Full-length cDNAs - Original: J033033G23

    full reading [+] show sequence

    Nucleotide sequence: J033033G23 - full reading 
    GTATCCTTTC TCGTCCACAC ACTCATGAAT CATCGCTCAC TCAAACAGCC 
    TTGCCTCCTC CTGTTGAGTT GACCCGATCC CATCCGGTGT TATCCATCCC 
    TTCCCTGATC CCCCATCCAT CGCCGCCGCC GCCGCCGCCG TGGAGACGAT 
    GACGACGAGA CGAAGAAGAA GCTCGTCATC GACACCGACC CGGGAATCGA 
    TGACGCCATG GCCATCTTCG TGGCGCTGAG GTCGCCGGAG GTGGAGCTGC 
    TGGGCCTCAC CACCATCTTC GGCAACGTCT ACACCACCCT CGCCACCCGC 
    AACGCCCTCC ACCTGCTGGA GGCTGTTGGG AGGACTGACA TCCCCGTGGC 
    AGAGGGATCC CATGTAACAA TCAAGAAAGC CACCAAGCTA CGGATTGCGA 
    GCTTTGTTCA TGGCTCGGAT GGTCTAGGAA ATCAGAACTT TCCTCCGCCA 
    ACTGGGAAGC CCTTAGATCA ATCGGCCGCC GCGTTTCTTG TCGAGCAGGC 
    AAATCTGTAC CCTGGACAAG TTACTGTGGT TGCCCTTGGT CCACTTACCA 
    ACCTAGCTTT GGCTATAGAA CTTGATCCTT CTTTCCCGAA GAAGATTGGG 
    CAGATTGTGA TCCTTGGTGG TGCGTATTCA GTTAATGGAA ATGTCAACCC 
    TGCAGCTGAG GCAAATATAT TTGGTGACCC TGATGCAGCT GATATAGTTT 
    TCACCTCCGG TGCTGATATT TTGGCTGTGG GAATAAATAT TACACACCAA 
    GTAGTTCTTT CTGATGCTGA CCGGGAAAAG CTTGAACAGT CTGATAGCAA 
    ATATGCCCGA TACTTGAGCA AGATCCTGGG TCTTTATTAT GATTACCACA 
    AGGACGCCTA CTTCATAAAA GGAGTGTATC TTCACGATCC AGCAACACTT 
    ATTGCTGCGG TAGATCCGTC ACTGATGACT TACACGGAAG GTGTAGTGAG 
    GGTGCAGACT GATGGCATCA CAAAGGGTCT CACAGTTTTC GACACAACCA 
    AGAAAAGGTA TGGGGAGATA ACTGCGTGGA CCGGTAAGCC AACCGTGAAG 
    GTTGCTGTGA CCGTTGATGC TCCTGCCGTT GTGGAGATGA TCATGCAGAG 
    GCTTACGACG GATGATTAGC AGCAGCAGCA GCAGCAGCAG CAAGCAAGCA 
    GCCAAGGGAA AAACGCTGCC TTTGTCTTGT TGAACCTGTC GGATCTTATA 
    AAGAATAGAC AATGCTGTAT ATCCTAAATT CTGAAGAATT TGCTTTACAT 
    GATTCGTCGT CGAGGTTGAT CAACATCACA CAGAACTAGC TAGAAACAGC 
    CTGATGCACT GATTCAGAGG TTGACAATCC ATTTCAATTT TATGGCCAGA 
    ATTCATACC

    Gene models with high sequence identity

    1. AT1G05620.1 [+] show detail - uridine-ribohydrolase 2
      E-value: 1e-132; Score: 469.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Inosine/uridine-preferring nucleoside hydrolase 2.2e-96
    Gene3D Inosine/uridine-preferring nucleoside hydrolase 7.9e-92
    HMMPanther Inosine/uridine-preferring nucleoside hydrolase 1.7e-87
    HMMPfam Inosine/uridine-preferring nucleoside hydrolase 1.9e-87

    See the detailed result >

    AT1G05620.1

    Model type
    Protein coding
    Short Description
    uridine-ribohydrolase 2
    Computational Description
    uridine-ribohydrolase 2 (URH2); CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1); Has 6369 Blast hits to 6297 proteins in 1349 species: Archae - 75; Bacteria - 4652; Metazoa - 179; Fungi - 246; Plants - 186; Viruses - 0; Other Eukaryotes - 1031 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR