K24047

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24047

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24047

Determination of introduced cDNA(s)

  • J023049F08 - Rice Full-length cDNAs - Original: J023049F08

    full reading [+] show sequence

    Nucleotide sequence: J023049F08 - full reading 
    GGTGTGTTTC ACTCGAAGGC TCGCTCCACT CGAAGACCGA GGCGTCCACC 
    ACCACCACCA CCACTCGAGT TCCCCCACGA TCCCCAACCC TTCCTCCTCC 
    GATTCGCCGC CGGTAGCTGC CAGCGTCTGC TCCCCGGCTC GCCGCGCGCC 
    GGCCGGCGAG TGCACCGCGC GCGGGCGCTT GGTCGACGCT ATCTCCGGAG 
    TACTCCGCGT GGATTTGGGT GAATAGTGGC TCGTTTCGAC AGGGTGACTT 
    GTGCTGTGCT CGATCGCGGT CGTCGCTTGC TGTTGATCGA CCGGTCCAGA 
    TCCGCGTCGT TTACACGGTG CGTGGCTGTT CCTCAATCTA CGGGTGAGTG 
    TTTTCTGAAC GAATCGATCC TACCTGTTCG GGATTGCTTG TAGAAGAGAC 
    AAAAAGAGAG TGATGTTGTT TCACGCAACC GAGAATTAAT TAATTAAATC 
    GTCTGGCATG GTAGATTTTG CTGCGTGCGT AGAAAAGAGA TTTCCTAAAT 
    TTGGGGATAC TAGTGGACGA TCGATCGAGC GCCTATTCTG TCGATCGGTT 
    CGTGGATTCA TGGCTTGAGC TCATGAGTTG GTTGGTACGT TCCCGCGTTT 
    TGTAGATCGG ACCTCGGACT CATGGAGAAC CGCGTCGGTG AGTCGTCGGC 
    GACCGCCGTC GATGGCGGCG GCGGCGCCAA GGACTCGGGC AGCTTCGAGT 
    GCAACATCTG CCTGGAGCTA GCCCAGGACC CCGTCGTCAC CCTCTGCGGC 
    CACCTCTTCT GCTGGCCGTG CCTCTACGAG TGGCTCCACG TCCACGCGCA 
    CTCCCGCGAG TGCCCCGTCT GCAAGGCCGG CCTCGAGGAG GAGAAGCTCG 
    TCCCCCTCTA CGGCCGCGGC AAGGCCTCCA CCGATCCCCG CTCCAGGTCG 
    GTGGCCGGCG TCCAGATCCC CAGCCGGCCG GCCGGGCAGC GGCCGGCGAC 
    GGCTTCCCAG CCTGATCATC ACCACGACCA TTTGCCGCAC CACGACCCGT 
    GGTTCATGGG CGGCGCCGGC GCCCCTGTGG CCGGCGGTCG CTGGGGGAAC 
    TACACTTTCT CGGCGGCCAT TGGGGGGCTT TTCCCATTGC TGAGCTTCCA 
    GGTTCATGGG TTCCCGCAGG CGGCGGCGTA TGGACCTGCC GCTGGGTTTC 
    CTTACGGGTA TGGACATTCG TTCCATGGCT GGCATGGCCA TGGTTTCCCG 
    CACCAGGCAC CGCAGGGCCA GCATGTTGAT GTGTTCTTGA AGGTATTGCT 
    TGTTCTGGTT GGTGTTCTTG TGATTGCCAG CTTGATTGTG TTTTAGATGT 
    GTGCAGTTAG CTATGGCCAA TCCTCGGTGA TGAGCCTGTA TGAAACGGTT 
    TTATTGTGTC AATATTAGGT AGTAGCTCCC ACGGGTTGAT CAGTGTGGAG 
    AGATAGTACA AAGATGATGC TTCAGTAGTT ACTAGTAGGA TTCTGTGATA 
    ATGAGTGGTA GCTGATAATG TTGTCGTGCT TCTCGATATA TTACTTGTGC 
    AGTTGCAAGT CTTGTTTGTA GTTTTTAAGT GAAGTTTGAA TCCTTGTTAT 
    CTTTTCATAA TGCATTTGCA TTCCAACCC

    Gene models with high sequence identity

    1. AT1G19310.1 [+] show detail - RING/U-box superfamily protein
      E-value: 4e-49; Score: 192.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 7.1e-18
    Gene3D no description 7e-16
    ProfileScan Zinc finger, RING-type 13.463
    HMMSmart Zinc finger, RING-type 1e-08
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMPfam Zinc finger, C3HC4 RING-type 1.8e-06
    HMMPanther RNF5 1.9e-47

    See the detailed result >

    AT1G19310.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR