K24050

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24050

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24050

Determination of introduced cDNA(s)

  • J013111C16 - Rice Full-length cDNAs - Original: J013111C16

    full reading [+] show sequence

    Nucleotide sequence: J013111C16 - full reading 
    GTGAGCGCGC TGCGGCCGTC CAAGACCATG GCCATCACCG ACCAGGCCAC 
    GGCGCTGCGG CAGGCTGGCG TCCCGGTCAT CGGCCTCGCC GCCGGGGAGC 
    CCGACTTCGA CACGCCGCAC GTGATTGCTG AGGCTGGGAT GAATGCAATT 
    AAGGATGGTT ATACAAGGTA CACTCCTAAT GCTGGGACTT TGGAGCTGAG 
    AAAGGCTATC TGCAATAAAC TCCAAGAGGA AAATGGGATA TCCTACAGTC 
    CAGATCAGGT GCTGGTGAGC AATGGAGCTA AGCAATGCAT TACGCAAGCC 
    GTACTTGCCG TTTGCTCACC TGGTGATGAG GTTTTGATAC CAGCACCATA 
    CTGGGTCAGT TATCCTGAGA TGGCTACATT GGCTGGTGCA ACTCCAGTGA 
    TCCTTCCTAC AAGCATATCA GAGAATTTCT TGCTAAGGCC AGAGCTGCTT 
    GCTTCAAAGA TCAACGAGAA ATCGAGGCTT TTGATTCTCT GCTCTCCTTC 
    TAATCCAACT GGATCAGTAT ATCCAAAGGA GCTGCTTGAA GAAATAGCTG 
    ACATAGTCAA GAAGTATCCT AGGCTTCTTG TTTTGTCTGA TGAGATTTAT 
    GAGCATATCA TCTATCAGCC AGCAAAACAC ACAAGCTTTG CTTCATTGCC 
    TGGAATGTGG GATAGAACAT TAACTGTAAA TGGTTTTTCT AAGGCTTTTG 
    CAATGACGGG CTGGCGACTT GGATACCTTG CAGCCCCAAA ACATTTTGTT 
    GCAGCCTGTG GAAAGATCCA AAGCCAGTTT ACTTCAGGTG CTAGTAGCAT 
    ATCACAGAAG GCAGGGCTCG CTGCTTTGAA CCTTGGCTAC GCTGGTGGTG 
    AAGCAGTCTC AACTATGGTC AAAGCATTCC AGGAACGTCG TGATTACCTT 
    GTAAAAAGTT TCAAGGAACT GCCAGGTGTG AAGATATCAG AGCCTCAGGG 
    TGCCTTTTAT TTGTTCATCG ACTTCTCCTA CTATGGATCT GAAGTAGAGG 
    GTTTTGGCAC TATCAAGGAC TCTGAGTCCC TCTGCATGTT CCTCTTGGAG 
    AAAGCACAGG TTGCACTTGT CCCGGGCGAT GCATTTGGGG ACGACAAATG 
    CATCCGCATG TCATATGCTG CAGCACTATC TACGCTTCAA ACTGCTATGG 
    AGAAAATCAA AGAAGCTGTT GCGCTGATCA AACCCCGTGT TGCTGCTAAG 
    TGAAAATGTG AGGTTATACA ATGGCAGTGG GGAGTGACCA AAGGCGCCTT 
    CAACTGCCAC TTCGGTACCA TTTGAAATAC AAACGATGTG TCATTGTCTG 
    ACAAGTAAGA ATTTTTGTTG TTTGATTGTG TCTGCTGTGA TAAAGAACTT 
    GAATGTAACT CCGGGAAAAT GGATAATACT TCTTGATTTC TTTTTCTAAA 
    CAAGG

    Gene models with high sequence identity

    1. AT2G22250.3 [+] show detail - aspartate aminotransferase
      E-value: 7e-162; Score: 567.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Aminotransferases, class-I, pyridoxal-phosphate-binding site 0
    HMMPanther ASPARTATE AMINOTRANSFERASE 2.6e-169
    HMMPanther SUBGROUP I AMINOTRANSFERASE RELATED 2.6e-169
    superfamily Pyridoxal phosphate-dependent transferase, major domain 6.8e-111
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 4e-07
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 4e-07
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 4e-07
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 3.4e-74
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 2.9e-20
    HMMPfam Aminotransferase, class I/II 1.2e-71

    See the detailed result >

    AT2G22250.3

    Model type
    Protein coding
    Short Description
    aspartate aminotransferase
    Curator Summary
    Encodes a prokaryotic-type plastidic aspartate aminotransferase with glutamate/aspartate-prephenate aminotransferase (PAT) activity.
    Computational Description
    aspartate aminotransferase (AAT); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G77670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR