K24139

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24139

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24139

Determination of introduced cDNA(s)

J013157C02 - Rice Full-length cDNAs - Original: J013157C02

full reading [+] show sequence

GGCCGTCAGC CCGTCTCTGG CCTCGTCACT TCACTCCACT GGCGGCGGCG 
GCGGCGGCGA CAGGACTCCC GCCGCCGCTC AGCTCCGGCG TCGCCCTCCC 
GGAGGTCCTC GTCGTCTGGG ACATCCTGGT ACGGCTTCCC CCCAAACCCC 
TCCTCCGCTG CCGCCTGGTG TGCCGCGCAT GGCGCCGCCT CACCTCCACC 
CGCGACTTCC TCCTCGCCCA CCACCGCCAC CAGCCCTCCC TCCCCCTCGT 
CACCGGCTGC AGAAACGGCG ACGTCCTCGC CGTCGACCGC CGGCGCCGGC 
TCCTCCACCC CGTCGCCCGG TTCGACAGCT CCGTCTTCTG CGTGGAGGAG 
GCCTCCTGCG ACGGCATCCT TGTCCTCTGG AGGAAGAGGG CCATCGGTGC 
CCATTCCAGT GTCCGCTTCT CGATCTGTAA CCCGACCACG CGTCAGTCCG 
GTGACATCCC GCTGCCGCTG CTCACCGGGT TCATGCTCAT GGGCTTGTAC 
TGGCACCGCC CCACCGGCGA GTATCGGCTT CTGCTCTACA GGATAGAGCT 
ACCTGCTTCG GAGCGGCTCG TTGATGTTCT GATCCCCGGC GATAGAAACG 
CCTGCTACGT CTACACATTG GGCTCTGGCG ATTTGCCGAG GTGCATTGGG 
TGGCCAGAGG CGGAGGCAAA CGGCGCATCT GTGCTGCTGC ATGGGAGCCT 
GCATTGGTAT AAGAGAATCG AAGATATGAT TTTGGCGTTT GACATTACAG 
CCGAGTCGTT CCGGTGGATG CGGTCTCCAT TCGGCAAGGC GGTGTGGAGA 
GCGTTTCATG GCCTGTTTGA GATTAATTGT ATGCTCGGCA TGTACTGCTG 
TGACGATGGT GCGACATTTG TAGATATCTG GGTGCTGGAG GATTATGAGA 
GAGAGGTCTG GTCTCTCAAG TACCGGGTTG AATTGCCAGT TCTAGAGATC 
AGGAGAGAGC TTGATGTGAA GCGTGATCTT TACAGTGTGA TGGTTTCTTC 
CGAGGATGGG GATGTGCTTG TGCTGGTTAA CTGCAAACGA GCCATGCTCT 
ACATTGGTAC TGATGGCAAG CTGTTGGCGA GTTTGCCACA TGATAATG

Gene models with high sequence identity

AT3G52320.1 [+] show detail - F-box and associated interaction domains-containing protein
E-value: 2e-06; Score: 50.40

InterPro Scan Digest

Program	Description	E-value
superfamily	F-box domain, Skp2-like	6.1e-10
HMMPfam	F-box associated domain, type 3	4.6e-06
HMMPfam	F-box domain, cyclin-like	1.7e-05
HMMTigr	F-box associated interaction domain	8.8e-06

See the detailed result >

AT3G52320.1

Model type: Protein coding
Short Description: F-box and associated interaction domains-containing protein
Computational Description: F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT3G52330.1); Has 2113 Blast hits to 2071 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2111; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR