K24222

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24222

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24222

Determination of introduced cDNA(s)

  • J023025J17 - Rice Full-length cDNAs - Original: J023025J17

    full reading [+] show sequence

    Nucleotide sequence: J023025J17 - full reading 
    GAAACAGGCA AACGCACTCG CATCTCCAAT TCGGTCCGAA TTTTTCCAAA 
    TTCCAATTGC TCATCGCGCT TCGAATTCGT TGCCGAGATC CATCCAATCT 
    TTGAGTTAAG ACATGCCGTC AGAGTTCGTC GCCGCCAGGA AGAAGCCGCC 
    GGTGGAGATA CGCCGGGTGT GGGCGCACAA CGTGGAGGAG GAATTCCGGA 
    TCATCCGCAA CGCGATCGAT CACTTCCCGT ACGTGTCCAT GGACACGGAG 
    TTTCCCGGCG TGATCCACCG CCCGACCAAG CACCCCGCCC TGCTCACCGC 
    CGGCGACCGG TACGACCTCC TCCGCCGCAA CGTGGACGCG CTCCACCTCA 
    TCCAGGTGGG CATCACCCTC GCCGCGTCCC CCACCGCGGC GCCCGCGCTC 
    GCCTTCGAGA TCAACCTCTC CGACTTCGAC CAGCGCGTCC ACCGCCACGC 
    CGCCGAGTCC GTCCAGCTGC TGGCGGAGCA CGGCGTGGAC CTCGCCGCGC 
    ACCGCAGGCA CGGCGTCAGG GCGAGCGCGC TGGCGCCGCT GCTCATGTCG 
    TCGGGCCTCG TCTGCTCCCA CGGCGCCGTC AAGTGGGTCA CCTTCCACTC 
    CGCCTACGAC TTCGCCTACC TGGTCAAGCT CCTCATGGGG CGGAAGCTGC 
    CGAGGTCCAT GGCCGAGTTC CTGAACCTGG TGCGCGTCTT CTTCGGCGAC 
    GAGGTGTACG ACGTGAAGCA CATGATGCGG CACTGCGGCG GCGAGCTGTA 
    CGGCGGGCTG GAGCGCGTGG CGGCGGCGCT GCAGGTGAAG CGCGCGGCGG 
    GGCGGTGCCA CCAGGCCGCC TCCGACAGCT TGCTCACCTG GGACGTCTTC 
    CGGCGGATGC GGGAGCTCTA CTTCCTCAAG CATGGCGTCG AGGCCTACCA 
    AGGCGTGCTC TTCGGCCTGG AGCTCGACAT GGACATGCCC AGCAACAAAA 
    CACCCTCGCT GCCGCTGGTG GCAGCGAGAT GATACGATCT CCTCTCCTCC 
    GCTGTAAAAT TTGTTGATTC GTCGTCTGCA AGAAAGGATT TCTTTCGGCA 
    GATGTACAGT AATAATAAGA GGGAAAAAAA GATGGTTTAA TTGATTGGTT

    Gene models with high sequence identity

    1. AT5G22250.1 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
      E-value: 7e-73; Score: 271.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CCR4-ASSOCIATED FACTOR 7.8e-100
    HMMPfam Ribonuclease CAF1 1.4e-56
    Gene3D no description 3.1e-83
    superfamily Polynucleotidyl transferase, ribonuclease H fold 1.4e-87

    See the detailed result >

    AT5G22250.1

    Model type
    Protein coding
    Short Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Computational Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G44260.1); Has 907 Blast hits to 897 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 254; Fungi - 150; Plants - 381; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR