K24228

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24228

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24228

Determination of introduced cDNA(s)

  • J023083K19 - Rice Full-length cDNAs - Original: J023083K19

    full reading [+] show sequence

    Nucleotide sequence: J023083K19 - full reading
    GATTTCCCCT CTCCCCACCT CCGCGTCTCC TCACCATGGC TTCCGCCTTC 
    TCCCCCGCCA CCGCCGCGCC CGCCGCGTCG CCGGCCCTCT TCTCCGCCTC
    CACCTCCCGG CCTCTCTCCC TCACCGCCGC CGCCGCTGCC GTCTCAGCCC
    GTATCCCGTC ACGGAGAGGG TTCCGCCGCG GCCGCTTCAC CGTCTGCAAT
    GTAGCCGCCC CCTCCGCCAC CCAGCAGGAG GCTAAGGCGG CGGGCGCGAA
    GGAGAGCCAA CGGCCGGTGT ATCCGTTCGC GGCGATCGTG GGGCAGGACG
    AGATGGAGCT GTGCCTGCTG CTCAACGTCA TCGACCCTAA GATCGGCGGT
    GTCATGATCA TGGGAGACCG TGGCACCGGC AAATCCACCA CCGTCCGCTC
    GCTCGTCGAC CTGCTCCCGG ATATCCGCGT CGTTGTTGGC GACCCTTTCA
    ATTCCGACCC TGACGATCCC GAGGTCATGG GCCCTGAGGT CCGGGAACGC
    GTGCTGGAGG GTGAGAAGCT TCCTGTTGTC ACGGCCAAGA TCACCATGGT
    AGATCTTCCC TCCCCCAACA ACTCGGCCAA ATTCAAAGCA AAGCCGCCAT
    TACTGCTCCT CTTCCATTCC ACTGGGGACG TACGAGCTCC GCGCATCCCT
    TCCATTCCAT TACTGACCTT GGCTGCTGCG GCTGCAGTGC AGAGGGGGTT
    TGGTGGTGCG GTTGATTTGA GCAATAAATT CTCTAGGGGG GAGGGAGGTA
    TCGGTCATGG CTGCCGCTGC TGCAAGGAGG GGCTCATCGC TGCTCTCTCG
    CTGCCTGCTG TCCAGGCCCG CCGCCGCCGC CTCGCCTGCT GTCCCCTCTG
    CGCTCCGCAG GGCAGATGGG ACACAAGGAT TGTTGCCGGG AATCCTTCAG
    AGGTTCAGCA CTGCAGCAGT AGCAGAGGAG CCCATATCAC CCCCAGTCCA
    AGTGAACTAC ACTCAGCTCC TCATTGATGG AAAATTCGTT GATTCAGCAT
    CTGGCAAAAC TTTCCCAACT CTGGACCCTC GTACCGGGGA GCTGATTGCC
    CATGTGGCTG AAGGCGATGC GGAGGATATT AACCGTGCGG TTCATGCGGC
    CCGCAAGGCT TTCGATGAAG GGCCATGGCC AAAGATGACT GCCTATGAGA
    GATCCCGGAT TCTGTTGCGG TTTGCTGACT TGATTGAGAA GCACAACGAT
    GAAATTGCTG CATTGGAGAC ATGGGACAAC GGCAAGCCGT ATGCGCAAGC
    TGCCAACATT GAAGTGCCAA TGGTGGCACG GCTGATGCGG TACTATGCTG
    GTTGGGCTGA CAAGATCCAT GGGCTTGTCG TGCCGGCTGA CGGCCCACAC
    CATGTACAGG TGCTGCACGA GCCCATTGGT GTCGCAGGTC AGATCATCCC
    ATGGAACTTT CCGCTTCTGA TGTTTGCGTG GAAAGTTGGC CCTGCTTTGG
    CTTGTGGAAA CACTGTTGTG CTCAAGACGG CTGAGCAAAC TCCTCTGTCT
    GCTCTATTTG CTTCTAAGCT GTTGCATGAG GCTGGACTCC CAGACGGTGT
    TGTTAACGTG GTATCTGGTT TTGGACCTAC TGCTGGTGCT GCTCTTGCTA
    GTCACATGGA TGTCGATAAG ATTGCATTCA CTGGATCGAC CGATACTGGA
    AAAGTCGTCC TTGAGTTGGC TGCAAGGAGC AACCTTAAGT CAGTGACACT
    GGAGCTAGGA GGCAAGTCTC CTTTCATCAT CATGGATGAT GCTGATGTTG
    ACCATGCTGT TGAGCTTGCG CATTTTGCAC TGTTCTTTAA CCAGGGACAA
    TGTTGCTGTG CTGGGTCTCG TACATTTGTG CATGAGCGTA TCTATGATGA
    GTTCGTGGAG AAGGCCAAGG CTCGTGCTCT CAAGCGTGTG GTTGGTGATC
    CATTCAAGAA TGGTGTTGAA CAGGGCCCTC AGATTGATGA CGAGCAATTC
    AACAAGATCT TGCGCTACAT CAAGTATGGT GTTGACAGTG GAGCCAACCT
    TGTGACTGGT GGCGACAGAT TAGGTGACAA AGGTTACTAC ATCCAGCCAA
    CAATTTTCTC GGATGTACAG GATAACATGA GGATTGCTCA AGAAGAGATA
    TTTGGCCCTG TGCAGTCCAT TCTGAAGTTC AATGATCTGA ACGAGGTCAT
    CAAGAGGGCA AATGCAAGCC AGTACGGGCT GGCTGCTGGG GTCTTCACCA
    ACAACCTGAA CACGGCCAAC ACCCTGACCC GCGCGCTCAG GGTCGGGACC
    GTGTGGGTGA ACTGCTTCGA CGTCTTCGAC GCCGCGATCC CGTTCGGCGG
    ATACAAGCAG AGCGGCATCG GGAGGGAGAA GGGCATCGAC AGCCTGAAGA
    ACTACCTGCA GGTCAAGGCC GTCGTCACGC CGATCAAGAA CGCCGCGTGG
    TTGTAAACAC ATAGATGTTT GGACATTTCA GAACTGGGGA AGAAATAGGT
    ATAATCTTAT GGACGGATGC GAAAATGGCG ATAAATTATG GCGATAAGAT
    TATGATGATG ATGATGAAGA AGAAGAAGAG GAGGAGGAAG AACAGCTGAA
    ATAAGCTTGT CCTAGCATGG GGCTGGCATT GTCTCTAATA AACCTTGTGG
    TTGGTGCTCA TGTTACTGAT GGAGTATATT GTAGAAGCAG ATTTATGTTC
    ATTATGAAAT ATATATCGCT TGTTTGGGAT G

    Gene models with high sequence identity

    1. AT1G23800.1 [+] show detail - aldehyde dehydrogenase 2B7
      E-value: 0; Score: 828.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Aldehyde dehydrogenase, conserved site 0
    PatternScan Aldehyde dehydrogenase, conserved site 0
    superfamily Aldehyde/histidinol dehydrogenase 5.9e-191
    superfamily P-loop containing nucleoside triphosphate hyd 2.3e-14
    Gene3D Aldehyde dehydrogenase, N-terminal 1.7e-110
    Gene3D no description 4.8e-15
    HMMPanther ALDEHYDE DEHYDROGENASE 2e-292
    HMMPanther Aldehyde dehydrogenase 2e-292
    HMMPfam Aldehyde dehydrogenase 3.5e-184

    See the detailed result >

    AT1G23800.1

    Model type
    Protein coding
    Short Description
    aldehyde dehydrogenase 2B7
    Curator Summary
    Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.
    Computational Description
    aldehyde dehydrogenase 2B7 (ALDH2B7); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B4 (TAIR:AT3G48000.1); Has 60835 Blast hits to 60447 proteins in 2994 species: Archae - 474; Bacteria - 34339; Metazoa - 2649; Fungi - 2135; Plants - 1675; Viruses - 0; Other Eukaryotes - 19563 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR