K24314

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24314

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24314

Determination of introduced cDNA(s)

  • J033149D13 - Rice Full-length cDNAs - Original: J033149D13

    full reading [+] show sequence

    Nucleotide sequence: J033149D13 - full reading 
    GAGCTAGAGC TAAGCTAATT AAGCAAGCTA ATGGGTTGGT AATAACAATG 
    GCGGCGGCCG GACGAACACT TGGATGCATA TATGCAGGGA CGCTGGTGAC 
    GGCGAGCGCG CACATAATAA CGGCGGTGAT CGGCTCCGGC GTGCTGTCGC 
    TGGCGTGGGC GATAGCGCAG CTGGGGTGGG TGATCGGGCC GGCCGTGCTG 
    GTGGCGTTCT CGGTCATAAC CTGGTTCTGC TCCAGCCTCC TCGCCGACTG 
    CTACCGATCT CCCGACCCCG TCCATGGCAA GCGCAACTAC ACCTACGGCC 
    AAGCCGTCAG GGCCAACCTA GGTGTGGCCA AGTACAGGCT CTGCTCGGTG 
    GCACAGTACG TCAATCTCGT CGGCGTCACC ATTGGCTACA CCATCACTAC 
    GGCCATCAGC ATGGGTGCGA TCAAACGGTC CAACTGGTTC CATCGCAACG 
    GCCACGACGC AGCCTGCTTG GCATCTGACA CGACCAACAT GATCATATTT 
    GCTGGCATCC AAATCCTCCT CTCGCAGCTG CCGAATTTTC ACAAAATTTG 
    GTGGCTCTCC ATTGTCGCTG CTGTCATGTC ACTGGCCTAC TCAACCATTG 
    GCCTTGGCCT CTCCATTGCA AAAATTGCAG GTGGGGCCCA CCCCGAGGCA 
    ACCCTCACAG GGGTGACTGT TGGAGTGGAT GTGTCTGCAA GTGAGAAAAT 
    CTGGAGAACT TTTCAGTCAC TTGGTGACAT TGCCTTTGCA TACTCCTACT 
    CCAATGTCCT CATAGAAATT CAGGACACGA TGCGGTCGAG CCCGGCGGAG 
    AACGAGGTGA TGAAGAAGGC GTCGTTCATC GGAGTCTCGA CGACGACGAC 
    GTTCTACATG CTGTGCGGCG TGCTCGGCTA CGCGGCGTTC GGCAACCGCG 
    CGCCGGGGAA CTTCCTCACC GGCTTCGGCT TCTACGAGCC CTTCTGGCTC 
    GTCGACGTCG GCAACGTCTG CATCGTCGTC CACCTCGTCG GCGCCTACCA 
    GGTCTTCTGC CAGCCCATCT ACCAGTTCGC CGAGGCCTGG GCGCGCTCGC 
    GGTGGCCGGA CAGCGCCTTC GTCAACGGCG AGCGCGTGCT CCGGCTGCCG 
    CTCGGCGCCG GCGACTTCCC CGTCAGCGCG CTCCGCCTCG TCTGGCGCAC 
    GGCCTACGTC GTGCTCACCG CCGTCGCCGC CATGGCGTTC CCCTTCTTCA 
    ACGACTTCCT CGGCCTCATC GGCGCCGTCT CCTTCTGGCC GCTCACCGTC 
    TACTTCCCCG TCCAGATGTA CATGTCTCAG GCCAAGGTCC GGCGATTCTC 
    GCCGACGTGG ACGTGGATGA ACGTGCTCAG CCTCGCCTGC CTCGTCGTCT 
    CCCTCCTCGC CGCCGCCGGC TCCATCCAGG GCCTCATCAA ATCCGTCGCA 
    CATTACAAGC CATTCAGCGT CTCCTCATGA TCAAATTAAT AATTATTTGT 
    TAATACTGAT GATGATGATG ATATGATCCA TCGATCGATG AAGAACAAAT 
    ATATATATAT AGCGAGATCG ATCGATCGAT CAAGATCGTG AATGATATAT 
    ATAATACATA GTTAATCAAT CAGATGTTAA TTAAGTCGTG TTCGTGCGTG 
    TCTTTCAGAG TTCAGATCGA CAGGTTGATT TGAGATGAGT GCTCAAGTGT 
    TTCGTCAGAT GTAATTAACT ATGTAAGTGG TAAATTTAGC CTGATGATGA 
    TGATGATCAG TCTGAATGGA TGTCATGTAA GTGGTAAATT TGACATGAAT 
    GTAACAAAGT AGTAGCTTAG TTGC

    Gene models with high sequence identity

    1. AT5G49630.1 [+] show detail - amino acid permease 6
      E-value: 3e-177; Score: 618.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AMINO ACID TRANSPORTER 4.8e-95
    HMMPfam Amino acid transporter, transmembrane 5.2e-110

    See the detailed result >

    AT5G49630.1

    Model type
    Protein coding
    Short Description
    amino acid permease 6
    Curator Summary
    Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.
    Computational Description
    amino acid permease 6 (AAP6); FUNCTIONS IN: acidic amino acid transmembrane transporter activity, neutral amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: response to water deprivation, response to salt stress, aspartate transport, tryptophan transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 1 (TAIR:AT1G58360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR