K24437

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24437

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24437

Determination of introduced cDNA(s)

  • J013005L22 - Rice Full-length cDNAs - Original: J013005L22

    full reading [+] show sequence

    Nucleotide sequence: J013005L22 - full reading 
    GTTTTTTCGA TAAGGGGACT CATCTCTCAA GTGCACTGCT TCTCTTCGTC 
    TCTTCCCCCA TCTCCGGCGA GCCGTACTGG TCCAACTCCG GCGGCCAACG 
    ACCCCTCAAC TACCAGCTGT GGAGGAGAAC ATGGATGTGC AGGTGAAGGA 
    CTGGAGGAAC AAGGTCCGGG AACTGAGCTA TGATATCGAG GATTGCATCG 
    ATTTATTCAT GCACAAATTG AATCGCGGGG ATGATAAGGT CAACATTGTT 
    CTCAAGATGG CAAAGAAGAT TAGAATGTTA TGGTCAAGGC ATCAGATTGC 
    TAACCAGATC CAAGAACTTA AGGCTCGTGT CAAGGAAGAG AGTGATCGCC 
    GTTTGAGGTA CTACTTCAGC GAGTGCAATG CACATGTCGA CGGGACTAAA 
    ATTGATCCCC GCCTACCGGC GCTTTATGTT GAAGAAGAGA AGCTTGTTGG 
    TATCCATGGC CCTATGGAAG AGATCATTGA ATTGTTGATG AAAGAGGATG 
    GTTCGGGGCA AAAACTCAAA GTGGTATCCA TTGTGGGTTT TGGCGGACTC 
    GGCAAAACTA CTCTGGCTAA CCAAGTATAC AACAAAATCA AGGATCAATT 
    TGATTGCTCA GCTTTTATAT CTGTTTCGCA GAGTCCTAAC ATAAAGAAAA 
    TTTTATTTGA TATGCTTAAA GATGTGACCA GCCGAGACAA CTCTGATGAT 
    GATAAGCAAA TTAAAGTTGT TGGGGTCAAA GGAGATAAAT CCGATGATGA 
    GAGGCAACTC ATTGGTAAGC TCAGAGTATT CCTAGAGAAT AAGAGGTACT 
    TCATCATTGT TGATGATATC TGGAGTGCAT CTGCATGGGA ACATGTGAGG 
    TTAGCTTTGC CTGAGAACAG TCTTTGTAGT AGAATAATTA CAACCACACG 
    GAATGTCAAT GTGGCAAAAT CATGCTGCTC TGGTTTTCAA GGTTCTGTTT 
    ACAACATTCA ACCTCTAAAT GAGCAAGACT CTAAGAAGCT ATTTCTGAAA 
    AGGCTTTTCC ACTCAGACTC CAATTTTCCT ACTCACTTGG AAGAAGTTTC 
    ACATGCAATC ATTAAAAAGT GCCATGGCTT TCCATTAGCT ATTATCTGTT 
    TAGCTAGTCT GCTAGCTAGT AAATCTGATA CAAAAGACCA ATGGGAGCAA 
    GTGCACAATT CTCTCAGTTC TGCGTTTAGT TCACAAGGGA TGAGCGATAT 
    ACTGCTGCTT AGCTATTATG ATCTACCCTA TCATCTGAAG ACATGCTTGT 
    TGTATCTTAG TGTATTTCCA GAGGATTATA AGATTGATAG AGATGAACTG 
    ATATGGAGAT GGATAGCTGA AGGTTTCATC ACTGAAGTGA AGGGTCAAAC 
    ATTGGACCAA GTTGGAGGGA GTTACTTTAA TGAGCTTATC AACAGAAACA 
    TGATTCAACC AATTGACATC AAATATGATG GTACCGCAAA TGCTTGTCGA 
    GTACATGATA TGGTGCTTAA CCTTATCATA TCCATTTCAT CTGAGGAAAA 
    TTTTCTCACC GTAGTTGACG AGCAAGGGTA TAAATATTTG GGTAATAAGA 
    TTCGACGGCT CTCATTCCAG TCCAACTCTG TTGAGAATGA TGTGAATGTA 
    GTTCAAAAGA TCATGGACAA CTTGTCACAG GTTCGTTCGC TAAGCTTCTT 
    TGAGGTACCA GAGAAAATAC CTCCTTTCTT AAAATTCCAT TCATTGAGTG 
    TATTGGTTTT AGTGGATTAT GATTTTTGTC TTGGTAATGG ACACATTAAA 
    TACCTTGGAA GTTTTTTCCA ATTGAAGTAT TTGAGAGTCA CTTCTTATGG 
    CATTACCCAG CTCCCAGATC AATTCGGGAA CCTCCATTAT CTACAAACTC 
    TGGATATACG TGGCAGTGGA ATCGAAAAGT TTCCGCCAAC CGTGGTCCGT 
    TTGCATAACT TGGCTCGTCT ACTTGTTGGC AATAAAGTGC AATTGCCTGA 
    TGGTATTGGA GATCTGCAAT CCTTACAGGT GCTGTCTTCT GCTCGGTTGT 
    ATAAACCCCT AAAACTTGTG GAAGATCTCA GGAGATTGAC CAAACTAAGG 
    ACGCTTGTGA TAGTTCTTCA TGGCAGTGAT ACACTTGGTG CTCATGAGAT 
    GGGAAGGTAT GAGGAAGCTT TGGAGTCTTC TCTTACTGTG TTGGGCAAAC 
    ACAAAATTCA GTCACTCGAA ATTTCATGTT GTGATTACTT GAGAGATAAA 
    TTACTGGATT TGTTGTGCTG CACTGTTCCA AACATTCAGA AGCTTGTAAT 
    ATCTGGCAAT TGCATAAATA GGCCTTCTCA GCAGATGCTA TCTCTTGTTA 
    ATCTCGCTCA CCTAGACATC TATTTCCAGA GGATTAAGCA GGAAGATCTC 
    AGTGTCCTTG GAAGCATATC TACTCTGCTC TACCTCCGGT TGAAACTGCA 
    TTTTGTGCCT GACGAAAGGC TCTGTATCAG CAGCCAACAA TTCCAGAGCC 
    TGATGGAGTT CAGATTCATA TATTATGAGG GGGGTGGCTT GAGGATGTTA 
    TTTCAACAGG AAGCAATGGC AAAGCTTCGA CGGTTACAGA TTCGGTTTAG 
    AGCAGAGGAA ATGGAGTCTA ATGCAGGTTT CGAGTTCAGT TTTCATCACC 
    TCTCAAGCCT GGAGGACCTT CATGCCACGA TTAGTTGTTA TAGAGCCACT 
    AGAAGTAGCG TGGAGGCTGC AGAAGCTGCC ATCAGGAATG CAGCTAGTAT 
    CCATCCTGGA CATCTAAAAG TTTCAATCAT AAGAGAGTGG GAAAGCCGCA 
    TGGCGGGGCT CAGAGAGAGA TGAATCTTGA GTATAGAAAT GATGTAAGGA 
    GGATGTTCAG AAAGAGGACC AAATGGCAGT TTCTTCAGAT TTTAGAAGTC 
    CTTTCAGGAC CAGCAGATTG GCCAACCACG TAATCTGATA TATAGAGGAT 
    TAGAATCAGA GATCCATATC AGTGTCTGTC ACAAGAATTA AGAAGCTATG 
    CAAGGTATTG TTTTCCCTCT AGAGACAGGA ATGGAATTCT TTTTAATGAA 
    TGAGTAGAGT CAAGGCGCGT GAGTTGCTAG TTCGATTGAT TGAGCTTGCT 
    ACCTGGCTAT TTGTATCTCC CTAAATATTT TTCCTCAAAA TTACTTTTGG 
    CACCC

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 3e-64; Score: 244.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 9.6e-26
    superfamily P-loop containing nucleoside triphosphate hyd 6.8e-19
    FPrintScan Disease resistance protein 1.9e-13
    FPrintScan Disease resistance protein 1.9e-13
    FPrintScan Disease resistance protein 1.9e-13
    FPrintScan Disease resistance protein 1.9e-13
    Gene3D no description 2.5e-09
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00016
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00016
    Coil coiled-coil 0
    HMMPfam NB-ARC 2.6e-66

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR