K24533

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24533

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24533

Determination of introduced cDNA(s)

  • J013052B01 - Rice Full-length cDNAs - Original: J013052B01

    full reading [+] show sequence

    Nucleotide sequence: J013052B01 - full reading 
    GTCCCTCTCA TTATTCTATC CTCTTCGGCT GGAGCAAGCT TGACTCCAGG 
    TCTCCCACCC GTTGACCCGA GCTCCCCTAC TCTCGCCGCC GGCCGCTTCC 
    ACCACGGCAT CGATCGATCG CGGGCGACGT GGCTGAGTGG CGGCGGACCC 
    GATTCGCGGC GCAGCAAGGG CGGGGCGGAG CGGAGCGGAG CCAGCGACGG 
    CGCGACCGCA TCCACTGTCC CGATCGACCT CCGATTCCGG CATTCAACAT 
    CAGATAGGCC AAGATGAACA TCGCCACAGG GGCAATGAAC ACCCTCCTCC 
    CCAAGCTTGG GGAGCTGCTG GTTGGCGAAT ACAAGCTGCA AAAGGGTGTC 
    AAGGGAGAGA TCGAAGAACT TGAGAAAGAG TTGAAAGGTA TGACCGCAGC 
    ACTCCACAAG GTGGCTGAGA CACCTGTGGA TCAACTTGAC CAGCAGGTCA 
    AGATCTGGGC CAGCGAGGTG AGAGAGCTAT CTTACGACAT CGAGGATGCC 
    ATCGACACCT TCATGTTAAA GTGCAAGGGG CATGAACCTG CCACGAGCTT 
    CAAGAAGGTC ACCAATTTGT TCAACAAGTT CAAAACCAAC CATCAGATCC 
    ACGGTGTCAT GAAAGACATC ATGGACCAGG TCAAGAAGGT CAGCGAACGT 
    CGTGATAGGT ACATAGTCGA CGACAATGCT GCCAGGCCAA CTGTTGTGGA 
    TGTTGATTCT CGCCTAGAAG CTATGTACCG AAAGGCGACA GAACTCATTG 
    GCATTAGCAA GCCAAAAAAT GAGCTAACTA AGCAACTCTT GGAATATGAC 
    GGCTCATCCA GCCAACAATC AAATATAATT TCTATTGTTG GATTCGGAGG 
    CTTAGGAAAG ACAACTCTTG CCAATTCATT ATTTCAGGAG CTTAAGGCAA 
    AATTTGACAG CTATTGTTTT GTTTCGGTGT CCTTGAATCC TGATATAAAC 
    AAGATTCTCA AGAACATTCT TCTCCAACTT GATGAGAAAA TGTATTCCCA 
    CATAGATGAA ACATGGGAAA CGAAGCAGCT CATCGACAAA ATTAGAGACT 
    TCCTCAACAA TAGAAGGTTC TTGTGCGTGA TTGATGATGT ATGGAAAAAA 
    TCAGCGTGGG ATACTATCAA ACTTGCTGTG CAAGATGCTA AACTTGGTAG 
    CAAAATAATT GTAACCACGC GAAACAAGGT CGTTGCAGAA CATGCAGGCA 
    GTGGTGTTTA TGAAATGAAA CCCTTATCTG ATGATGATTC CAGACAATTG 
    TTCTGCAAAC GAATATTTGA CTCTAACGAT GACTGTCCTG CTGATTTGTG 
    TGGTGTCACT GAGAAAATTT TGAAGAAATG TGGTGGTGTA CCGCTAGCAA 
    TCATCACTAC AGCATGCCTA CTTGCTAGCA AACCAAGGAA TTCAGAGGAA 
    TGGGACAAGG TCAATAAGTC TATCAGTTTG GGGCTTGAGA ACAACCTTGA 
    TGTGGACAAG ATGCGGAAGA TATTAAGCCT CAGTTACAAC GATCTACCTT 
    TTCATTTGAA GACTTGCTTG TTGTCTCTAA GCAAATATCC TGAGGATGAA 
    CTAATTAGAA AAGATGTTTT GATATGGGGT TGGTTAGCTG AGGGTTTTAT 
    TACAGATGAA ACACGACCTG TAGGGACAAG CTTGCAGGAG ATTGGAGAGA 
    GCTACTTCAA CGAGCTCATC AATCGAAGCT TGATCCAGCC GATGAGTGAG 
    GACAATTTTT GGGATGAAGA TGGTAAGGTG CATGTTTTTT GGGATGAAGA 
    TGGTAAGGTG CATGCATGCA AAGTACATGA CATGGTGCTT GAGCTAATAA 
    ATCAGCTGTC AGTAGAAGAA GATTTTGTTA CAACGTATTT ATCAGATGGT 
    CAACAAACAG GTAAACATAC ATGTACAGCA CAAAAGAAGA AGATTCGCCG 
    ATTATCTCTC CATAACAGCA ATAAATCCTA TGCCTCACCA GAAGCAAGAG 
    AACAATTGTC CAAAGTAAGG TCCATTACTA TCTTCGGCAA GGTCGACTCG 
    ATACCACCCT TGTCGAGCTT TCATGTCCTG CGTGTGTTGC AGCTTGAGGA 
    CTGCAGTGGA ATGGACAAGA ACCATCTTAA TCATCTCGAT AAGCTACGCC 
    TCCTAAGATT TCTGCGTCTA GGGCACTATA GTGCCACTGA GCTCCCTGAA 
    AGCATTGGGA AACTGGAATC TCTCGAAACC TTGGACATAA GAGGTGCACG 
    TAAACCAAGT TCTTTTAAAT CTCATAAGGT ACTGTTTCCA ATGTCTTTTG 
    CCAAACTAAG GAAACTGTTG CGGCTATATG CTGGCAGAGT GAAGCTGGCG 
    CAAGGTCTGA TGCTGGGGAA TATGAAATCT TTACAGGAGC TTGTAATAGA 
    AGCTACCCGA AAGGTAATAA AAGAGATTGG TAATTTGACA GAGCTAAGGA 
    CTCTTAGGAT CGTTTTCGGT AGTGAAAAAA CATTTGAGTT AAAGGAATCC 
    ATTCAAACGT CTATACAAAG GCTCACCAAT TTGCAAGACC TAGATTTGAG 
    AAATAATATT AGTTTTGAAG AAATCATAGA CATGCAACAG GTTCCTTCCG 
    GTCTCCAAAG GTTGTTCATG CCCGATTCGT TTATGAAAGC ATTCCCATGT 
    TGGATCAATT CATTGATGCT CTCCCACCTC ACCACCTTAT CCATTTGTCT 
    GGATTTCGAA TATCTCCAGT CTGACCACCT TGATCGCCTC GCTGAGCTTC 
    CATCTCTTCG CTTTCTCAGG CTACAGTTAG CATTTGTTTC GGAACAACTA 
    CAGGGAAAGC TCACTATCCA CAGAGGTGCA TGTGCATTTC GGAGTTTAAA 
    AGATTTTCAG TTTTATAGCT CCATGATGCC ATCGTTTCAA CCAGGAGCTA 
    TGCCCCACCT TGAAAGGCTT TATCTTTCTA TTTGGACCAG ACTAAGGAGG 
    GGTGGCTTAA ATGATTTAGG TTTGGAGAAT CTCTACTCCC TTCGGCATGC 
    AACCATTTAT TCCTTTGATG ATGACAGCAA GGCTGTTATT GAAGAGGCAC 
    TTAAGGACTA TCCTAATCAA GCAGCGCTCA AAATACAATC GATGATGATG 
    AACTAACTCA GGCGTCTTAC TCGTCATGTA ATTATGGTCA TTCAGTATCA 
    CCTGCAATCT ATCATCGTAA GCCCAACAAG GGAGCACACG AACAACAGGC 
    GATGCAACAG AGTGGGTGAA ATTATCAGTT TATCTATCTA TCTATCTATC 
    TATCTATCTA TCTACCAGTT GTTTTGGTTG TTTCCATTCC ATGAAATTAG 
    AATGGAGTTG TTTAGTTGGC TCTCTATAAA GAGCAGTACT ATGTTATTTG 
    GAATTCAAGC AAGAAGATAT AAGACCCTGT TAGTTTTCAT ATTATTCATG 
    GTGGGATTGT TGAAATGGAT TATTTACTCC ACGGATTGAA ATATATATTC 
    TCCACTGCAT TTGTTAGATC ACTTGTTTTA AGTTATATGT TAAGTTTATA 
    TTTTTTAAAT ATTTAATGTA TTATACAAGA GCTCGATGTG CATATCCATG 
    TAAGAAAAAA AGGATAGCTG GTTTGGCTGC TTGAAGCTGC AAGAGCTATT 
    AGGAGTCTGT GCCACCCAGA ATGCGCTGCA TGACATTGGT AAAGTTCATT 
    AGAGTTGTGA TTGAGGATGA ACGGGTGCTG ATTCTGCATT TTTATGCAGC 
    AAATCTCTAA TGCTCTAGCA GTGTTTCATA TTCATTATTG TTTTGGTGTA 
    TGTACTTCAA TGAATTGTTT CAACAAAAAA AAAAGGCATA TATATTATGA 
    TGCGAGTGAC TTGGTC

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 6e-58; Score: 223.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 4.8e-30
    superfamily P-loop containing nucleoside triphosphate hyd 2.3e-18
    FPrintScan Disease resistance protein 4.3e-14
    FPrintScan Disease resistance protein 4.3e-14
    FPrintScan Disease resistance protein 4.3e-14
    FPrintScan Disease resistance protein 4.3e-14
    HMMPfam NB-ARC 8.9e-66
    Coil coiled-coil 0
    Gene3D no description 2e-08

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR