K24628

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24628

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24628

Determination of introduced cDNA(s)

  • J023082M08 - Rice Full-length cDNAs - Original: J023082M08

    full reading [+] show sequence

    Nucleotide sequence: J023082M08 - full reading 
    GGCACCAACC CCTACCCTGA GAAGAGCTAG GTTTTTTACC CTCCTCACTC 
    TCCCTCGCGT CGGCGGCCGC GCGCAACTTT CCCTGAAGCC CCGGATCCAC 
    TCAACCCCCC TCCCCCTCCG CGCCAGATCG TTGTGTTTAT GAGCTCGAAG 
    GAGAAGCCCA CTCTTGGAGG CCAGCGGATT AAGACCCGCA AACGGAATAT 
    TGCTGCTCCT TTGGACCCTG CATCATTCTC TGATGCAATT GTCCAGATTT 
    ATCTGGATAA TGCTGGAGAC CTGGAACTTG TTGCCAAAAG TATCGAGTCC 
    TCGGATCTCA ACTTCTCACG TTACGGTGAC ACCTTTTTTG AGGTTGTATT 
    CATTGGAGGG CGCACTCAGC CTGGCACAAT AAAACCTGAG GAAGAAGGAG 
    AGCGTCACCC CTATTCTGTA CTTGATTGTG CAGCGCAGCG TGAAGCAATT 
    TTGCCTTCTG TTCTCTACAT TCAGAAAACA TTGCGCAGGA GGCCTTTCTT 
    GATAAAGAAT CTTGAAAATG TTATGCGCAA ATTCCTTCAG TCACTGGAGT 
    TCTTCGAAGA AAATGAGAGG AAGAAACTTG CCATTTTCAC AGCACTTGCC 
    TTTTCTCAGA AGTTATCAGG TCTTCCACCT GAAACTGTCT TCCAGCCACT 
    GCTCAAGGAT AATCTTGTTT CCAAAGGGAT AGTGCTTTCG TTCATTACTG 
    AGTTTTTCAA AGAATATCTG AAGGAGAACA CTTTAGATGA TCTTATTGCA 
    CTTTTGAAGA AAGGCAAAAT GGAGGACAAT TTGCTGGAAT TTTTCCCATC 
    GGCAAAAAGA ACCTCCGAGG CTTTATCTGA ACATTTCACT AAAGAAGGTC 
    TGACAAGTCT TGTTGAGTAC AATGAAAAGA AGATGTTTGA GGTTAAACTT 
    AAGGAGATAA AGTTAACACT GACAACAATG ATCAATGAAG AGGCTGAAAT 
    ATCTGAAGTC ACAGAAGCTG TCAAGCAACA GGTGAAAGAT GCTAAATTTC 
    CTGATATAGA GGTTGTTCGC ATGCTATGGG ATGTGCTGAT GGAGGCTGTT 
    CAGTGGTCTG GGAAGAACCA GCAACAAAAT TCTAATTCAG CACTTCGGCA 
    GGTGAAAGCA TGGGCTGGCC TTTTGAATGC ATTCTGCACA AGTGGCAGGC 
    TTGAACTCGA ACTCATATAC AAAGTTCAGA CACAGTGCTA TGAGGATGCT 
    AAGCTGATGA AGCTATTTCC TGAAATAATC AGAACGCTGT ATGACCAAGA 
    TGTCCTAGCT GAAGATACCA TCCTCCTTTG GTTCCGCAAG GGTTCAAACC 
    CAAAGGGCAG GCAATCTTTC GTCAAAGCAC TGGAACCTTT TGTTAAATGG 
    CTGGAGGAGG CCGAGGAGGA GGAATAAATG GTGCTACTGG AGGCTGTGCG 
    AATGTATTGT TTGAATATTT CCTTATATCC CAAGTTTCCA GCTAAAGTTA 
    TGTATCTTTT GCTCCCTTGT TACTGGGCCG ACCATTTTAT GATCACATGC 
    TGATCCTAAT AGTCTACTGA ATGTTAAAAT CCCATGCAAG AAGTTATTCC 
    AGGATTTGCT AAATTATTGG TTGTTACAAC TTACAAGAAT GTTCCATATG 
    TTATTTCTC

    Gene models with high sequence identity

    1. AT5G36230.1 [+] show detail - ARM repeat superfamily protein
      E-value: 0; Score: 654.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam eIF4-gamma/eIF5/eIF2-epsilon 5.7e-21
    Coil coiled-coil 0
    Gene3D eIF4-gamma/eIF5/eIF2-epsilon 5.7e-29
    HMMPanther HFB2 PROTEIN 7.4e-189
    HMMSmart eIF4-gamma/eIF5/eIF2-epsilon 3.4e-31
    ProfileScan eIF4-gamma/eIF5/eIF2-epsilon 25.976
    superfamily Armadillo-type fold 2.7e-39

    See the detailed result >

    AT5G36230.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: regulation of translational initiation; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G65220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR