K24643

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24643

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24643

Determination of introduced cDNA(s)

  • J013071L19 - Rice Full-length cDNAs - Original: J013071L19

    full reading [+] show sequence

    Nucleotide sequence: J013071L19 - full reading 
    GATCCGCCCC GCGAGCGAGC AGAGGCGGCG CTGCCGCTCG TCCCGCTGCT 
    TCCGCCGCAT CCACATCCTT CGCCGCCGCC GCCGCCGCCT GCGCCGATCC 
    CCCCATCCAT CCCGCGAGCG AGCATCCTGC TGCTTCCGCC GCATCCTGAA 
    ATTTGGCTTA ACCTTGATGT TTGTTTGTTC CCAAAAAGTT TGGGGGTGTT 
    GAACTGAACC CCCCATGCCC CATGTTAGAT CCGCCCATGA ATGGATCATG 
    ATTCACTCCA AAACACTATG GAGCATCCTG TTCCTGGAGA GGAGCATGAG 
    GAGGATAACA GCATGAAAGT GGATGTGGCA TTTGATGGAG TGCACAGCCC 
    GTTCCGGTAC AGGCACAAGA AAAGGTCCAA GGTTTGGGAG GAGTACAAGC 
    CCATCTTTCT GAATGGGAAG GTTCAGTTTG CGGAGTGTCT CTACAGCCAT 
    AATCGCCTCA GCTGCAAAGA TTCCAACGGC ACAAGCCATC TATGGCGGCA 
    TCAGAAAATC TGCCCTGGCA AGGAGGAAGC GGCGCAGAGG CGACAGAAGG 
    ATTCCTACTT CCCATGCGTT TTGGTGAATG AGAACGATCC AGTTTCACCC 
    CACGATCCGG TCAATGATGT TATTACAGAG ACGCTTAGTG ATATAAACTC 
    GGTAACACCC AGCGGTAACA GATTCACGTC AAAGGTGTGG AAGGAGTTTA 
    CACCTGTCTA TATTGAGGGG AAACTCCAGG CTGCAGATTG CATTCACTGC 
    CAGAAGCGCC TCAGTGCGAA TAAGTTCGGG GGGAGAAGCC ATCTGAGTCG 
    ACATCTTATA ACCTGTGCAG GACGACGTGG ACGTGGAGGG GGCCAAATTC 
    ATCAGAAGGG TTTATTTTAT CCTTCTAGCG TGCCTAGTTT GAAGTCCAGG 
    GTGCAAGATG AGCTCTCACC TGCCTTGACA AATGGGAAGG TTCAGATCGC 
    AGAATACTCT ATCAAGCTTC TGAGGGCAAG TAGCTCTGGT GACTCGACCC 
    CTAAGCCCAT TCGAGTGGTA CCAGCAGAGC ATTCCGTGCC GACTCCAGAT 
    TATACAAGCC TGATGAAACA GAGGACCTCA TTTGTGACCA CTCCAGCTGG 
    TCAGGAAACA TCTGATCCAG ACCTAGTCGG GATGATAGCT TTGCATGGTT 
    ATCCTTTGTC AATTGTGGAG CACGAAGAAA TGATGAGATT TGTAAAGAAA 
    CTCAACCCTG TGGTCAATTT AGTCTCTCGC AATGCTATGG AAGAACATTG 
    CTTGACACTA TTTCAGGAGG AAAAGGAAAA TATAAAGGGT AAAATTGCAC 
    ATTTTTCCCG ACGTGTCTCT CTGTCAGCAA GCATCTGGAC TCCTGATGGA 
    CCTGAGACAA CAGTAAATTA CCTCTGTTTG ACAGCACATT ATATTGATGA 
    AGACTGGAAA GTTCATAGGA TAATAATAAA ATTTGGAATG TTTTGGTCCG 
    CGCCTGCTGA TTTGGGAAGG ATGATACATT GTATGGAAGC CTGTGTCCCA 
    GAGTCTGAGA GCGGATCATA TAATGTCATA TTGGATGCCA TTAGAGATTG 
    GAATCTTGAT CAGAAGCTTT TAAGCTTGAC TTCTGTTGGT GAAGTTAGGG 
    GTGACACCAA TACTTCATTG CTAAAGGAAA TGCTTATAGA GAAGAAGTGC 
    CTTCCTATTG GAGGGACGCT ATTCAATGTT GCCTGTGTGG ACTATGTCCT 
    TAACAGTATT GTTTTCAAAG TGCAAGCAGA TATACTTCGT CTTGTTGGTG 
    ACATAGTAAT GGATTTTTTA GTGTCATTGA CCCAGCAGCA GCTTCTGGAA 
    GTTATTTCAC AGACGGGTCT AAAGTGTCCA CAAGAAGATG CTAAGTGGTG 
    GCACAAACTT TATTTTAGAC TTGAAGTGCT TTTGCATTTC AAGAAGTCAT 
    TTCCTTCTGA AGAAAGGGTG TCCCCAGAAG ATACAAAAAC TGCTGAGTCC 
    GTTTGCAAGA TTTTGAGGAC AATTTATCGT GTCATTGAAG TTATTTCCAG 
    CCCTAGCTCT CCGACAGCAA ATATATATTT TAACGAGATA TGGAAAGTCA 
    GGACAGTTTT GCAAGAAGAA GCATTAAATG ATCACAGAGA AATAGCTACA 
    GTGGCTATGG TGATGCAGGA AGCATTCAAT GAGTATTGGC AAAATTCATA 
    TTTGTGGTTG GCCATACCTG TTGTGCTAGA CCCTAGATTC AAATTCAGTT 
    TCATTGAGTT TCGTCTGAAA CGAGCTTTTG GAACAGATTC GGCAAGCTAC 
    CTATCTGTAA TACGTGAAAC AGTCCGGGAA CTCTTCAATG AATACTGCCA 
    TTCTTTGAAT CAGGCAAGTG ATGTTGTTTC AAACAGTGAA GCTTTGTGTG 
    CAGATGATAA TGATTCGTTG GAAGATTGGG ATCAGCATCT CCATGAACAA 
    GCAAGTCGTC AGCTATCTTC GGAGCTTGAT GATTACCTTG AAGATGGTTT 
    AGTTCCTAGA AAGGATGATT TTGATATTTT AAACTGGTGG ATGACTCATA 
    GTACTAAGTA CCCAACACTT GCAACTATTG CACGGGACAT CTTAGCCATG 
    CCAGCATCTG CTGTTCAATC TGAAGCAGCA TTCAGTAGCA GTGGACCAGT 
    AATTCCAAAA CACCAGAGTA CATTAAACAT CAGAACAATC GAGGCACTTG 
    TTTGTACTCG AGATTGGATG AGATAAAACT GAATCTTGTT TCCTTGTTTT 
    CCTGTATTGG AAGTTTGGAA CCATACTATA TGATCAGATG AATGTCAGAA 
    ACCAAAGCCT ACAATGTTAG TAACTTTATA TGGAAGTACA TATTAGAATC 
    TTACATGTTC ATGTGCAATC TTAGCAGCTA CATCACTTTA GGATGTTTTA 
    GATCATGCTT GTAATTTGTA ATTGAAACAT TTTGATCCCA TTGGCAATCA 
    TGAATATCTT GTTCTGCG

    Gene models with high sequence identity

    1. AT3G42170.1 [+] show detail - BED zinc finger ;hAT family dimerisation domain
      E-value: 7e-72; Score: 269.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, BED-type predicted 9.096
    HMMPfam HAT dimerisation 6.4e-25
    HMMPfam Zinc finger, BED-type predicted 1.2e-07
    HMMPfam Zinc finger, BED-type predicted 2.6e-07
    HMMPanther BED FINGER-RELATED 0.00016
    HMMSmart Zinc finger, BED-type predicted 5.8e-12
    HMMSmart Zinc finger, BED-type predicted 3.5e-08

    See the detailed result >

    AT3G42170.1

    Model type
    Protein coding
    Short Description
    BED zinc finger ;hAT family dimerisation domain
    Curator Summary
    transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner.
    Computational Description
    BED zinc finger ;hAT family dimerisation domain; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: BED zinc finger ;hAT family dimerisation domain (TAIR:AT1G18560.1); Has 1233 Blast hits to 1128 proteins in 97 species: Archae - 0; Bacteria - 4; Metazoa - 232; Fungi - 219; Plants - 755; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR